Files in MRCIEU/TwoSampleMR
Two Sample MR functions and interface to MR Base database

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/api.R R/enrichment.R R/forest_plot.R R/forest_plot2.R R/format_mr_results2.R R/harmonise.R R/instruments.R R/knit.R R/ld.R R/moe.R R/mr.R R/mr_mode.R R/multivariable_mr.R R/mysql.R R/other_formats.R R/password.R R/plots.R R/read_data.R R/rucker.R R/run_mr.R R/sensitivity_analyses.R R/steiger.R R/steiger_filtering.R R/zzz.R README.md
inst/data/DebbieData_2.txt
inst/data/alleles.txt
inst/data/bladdercancer.txt
inst/data/bmi.csv
inst/data/bmi.txt
inst/data/cardiogram.txt
inst/data/forest_plot_example.rdata
inst/data/telomere_length.txt
inst/data/telomere_length_pval.txt
inst/exe/plink1.90
inst/orig/SNP_lookups_pipeline_v2.R inst/orig/SNPlookups_GWASuniform_functions.R inst/orig/SNPlookups_GWASuniform_pipeline.R inst/orig/snplookups_function_v7.R inst/orig/two_sampleMR_pipeline_v2.R inst/orig/twosampleMR_function_v8.R inst/reports/mr_report.Rmd man/allele_frequency.Rd man/available_outcomes.Rd man/available_outcomes_mysql.Rd man/check_mrbase_access.Rd man/check_password.Rd man/cleanup_outcome_data.Rd man/clump_data.Rd man/combine_all_mrresults.Rd man/combine_data.Rd man/contingency.Rd man/convert_outcome_to_exposure.Rd man/create_label.Rd man/dat_to_MRInput.Rd man/default_parameters.Rd man/directionality_test.Rd man/enrichment.Rd man/enrichment_method_list.Rd man/extract_instruments.Rd man/extract_outcome_data.Rd man/extract_outcome_data2.Rd man/extract_outcome_data_mysql.Rd man/extract_outcome_data_using_get.Rd man/fishers_combined_test.Rd man/forest_plot.Rd man/forest_plot_basic.Rd man/format_aries_mqtl.Rd man/format_d.Rd man/format_data.Rd man/format_gtex_eqtl.Rd man/format_gwas_catalog.Rd man/format_metab_qtls.Rd man/format_mr_results.Rd man/format_proteomic_qtls.Rd man/generate_odds_ratios.Rd man/get_mrbase_access_token.Rd man/get_mrbase_status.Rd man/get_p_from_r2n.Rd man/get_password.Rd man/get_population_allele_frequency.Rd man/get_r_from_lor.Rd man/get_r_from_pn.Rd man/get_se.Rd man/harmonise_data.Rd man/harmonise_function.Rd man/knit_report.Rd man/ld_matrix.Rd man/ld_pruning_api.Rd man/mr.Rd man/mr_density_plot.Rd man/mr_egger_regression.Rd man/mr_egger_regression_bootstrap.Rd man/mr_forest_plot.Rd man/mr_forest_plot_grouped.Rd man/mr_funnel_plot.Rd man/mr_heterogeneity.Rd man/mr_ivw.Rd man/mr_ivw_fe.Rd man/mr_ivw_mre.Rd man/mr_ivw_radial.Rd man/mr_leaveoneout.Rd man/mr_leaveoneout_plot.Rd man/mr_median.Rd man/mr_meta_fixed.Rd man/mr_meta_fixed_simple.Rd man/mr_meta_random.Rd man/mr_method_list.Rd man/mr_mode.Rd man/mr_moe.Rd man/mr_penalised_weighted_median.Rd man/mr_pleiotropy_test.Rd man/mr_raps.Rd man/mr_report.Rd man/mr_rucker.Rd man/mr_rucker_bootstrap.Rd man/mr_rucker_cooksdistance.Rd man/mr_rucker_jackknife.Rd man/mr_scatter_plot.Rd man/mr_sign.Rd man/mr_simple_median.Rd man/mr_simple_mode.Rd man/mr_simple_mode_nome.Rd man/mr_singlesnp.Rd man/mr_steiger.Rd man/mr_steiger2.Rd man/mr_two_sample_ml.Rd man/mr_uwr.Rd man/mr_wald_ratio.Rd man/mr_weighted_median.Rd man/mr_weighted_mode.Rd man/mr_weighted_mode_nome.Rd man/multivariable_mr.Rd man/mv_basic.Rd man/mv_extract_exposures.Rd man/mv_harmonise_data.Rd man/mv_ivw.Rd man/mv_multiple.Rd man/mv_residual.Rd man/power.prune.Rd man/read_exposure_data.Rd man/read_outcome_data.Rd man/revoke_mrbase_access_token.Rd man/run_mr.Rd man/run_mr_presso.Rd man/set_password.Rd man/simple_cap.Rd man/size.prune.Rd man/split_exposure.Rd man/split_outcome.Rd man/steiger_filtering.Rd man/steiger_sensitivity.Rd man/subset_on_method.Rd man/toggle_api.Rd man/toggle_dev.Rd man/trim.Rd man/upload_file_to_api.Rd man/weighted_median.Rd man/weighted_median_bootstrap.Rd tests/api_alive.r tests/api_comparisons.R tests/example.R tests/forest_plots.R tests/harmonise.R tests/mr_test.R tests/multivariable_mr.R
tests/multivariable_mr.html
tests/multivariable_mr.rmd tests/mysql.R tests/plot_tests.R tests/sorting_gwas_catalog.R tests/test_moe.R tests/test_mr_sign.R tests/test_rucker.R tests/test_selection.R tests/test_steiger_binary.r tests/vignette.rmd tests/workflow.R
vignettes/figure/twosamplemr_schematic_long-01.png
vignettes/figure/twosamplemr_schematic_long.ai
vignettes/guide.Rmd
vignettes/refs.bib
MRCIEU/TwoSampleMR documentation built on Aug. 15, 2018, 4:39 a.m.