Files in MRCIEU/TwoSampleMR
Two Sample MR Functions and Interface to MR Base Database
.Rbuildignore
.gitattributes
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/check-full.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/TwoSampleMR-package.R
R/add_metadata.r
R/add_rsq.r
R/backward_compatibility.R
R/enrichment.R
R/eve.R
R/forest_plot.R
R/forest_plot2.R
R/forest_plot_1-to-many.R
R/format_mr_results2.R
R/globals.R
R/harmonise.R
R/heterogeneity.R
R/instruments.R
R/knit.R
R/ld.R
R/ldsc.r
R/leaveoneout.R
R/make_dat.R
R/moe.R
R/mr.R
R/mr_mode.R
R/multivariable_mr.R
R/other_formats.R
R/query.R
R/read_data.R
R/rucker.R
R/scatterplot.R
R/singlesnp.R
R/steiger.R
R/steiger_filtering.R
R/transform.R
R/utils-pipe.R
R/zzz.R
README.Rmd
README.md
TwoSampleMR.Rproj
_pkgdown.yml
index.md
inst/CITATION
inst/extdata/DebbieData_2.txt
inst/extdata/alleles.txt
inst/extdata/bladdercancer.txt
inst/extdata/bmi.csv
inst/extdata/bmi.txt
inst/extdata/cardiogram.txt
inst/extdata/forest_plot_example.rdata
inst/extdata/telomere_length.txt
inst/extdata/telomere_length_pval.txt
inst/extdata/test_add_metadata.RData
inst/extdata/test_add_mvmr_local.RData
inst/extdata/test_commondata.RData
inst/extdata/vig_exposure.RData
inst/extdata/vig_harmonise.RData
inst/extdata/vig_outcome.RData
inst/extdata/vig_perform_mr.RData
inst/reports/mr_report.Rmd
inst/sandpit/api_alive.r
inst/sandpit/api_comparisons.R
inst/sandpit/example.R
inst/sandpit/forest_plots.R
inst/sandpit/harmonise.R
inst/sandpit/mr_test.R
inst/sandpit/multivariable_mr.R
inst/sandpit/multivariable_mr.html
inst/sandpit/multivariable_mr.rmd
inst/sandpit/mysql.R
inst/sandpit/plot_tests.R
inst/sandpit/sorting_gwas_catalog.R
inst/sandpit/test_indels.r
inst/sandpit/test_moe.R
inst/sandpit/test_mr_sign.R
inst/sandpit/test_mrinput.r
inst/sandpit/test_rucker.R
inst/sandpit/test_selection.R
inst/sandpit/test_steiger_binary.r
inst/sandpit/vignette.rmd
inst/sandpit/workflow.R
man/Isq.Rd
man/TwoSampleMR-package.Rd
man/add_metadata.Rd
man/add_rsq.Rd
man/allele_frequency.Rd
man/available_outcomes.Rd
man/cleanup_outcome_data.Rd
man/clump_data.Rd
man/combine_all_mrresults.Rd
man/combine_data.Rd
man/contingency.Rd
man/convert_outcome_to_exposure.Rd
man/create_label.Rd
man/dat_to_MRInput.Rd
man/dat_to_RadialMR.Rd
man/default_parameters.Rd
man/directionality_test.Rd
man/effective_n.Rd
man/enrichment.Rd
man/enrichment_method_list.Rd
man/estimate_trait_sd.Rd
man/extract_instruments.Rd
man/extract_outcome_data.Rd
man/fishers_combined_test.Rd
man/forest_plot.Rd
man/forest_plot_1_to_many.Rd
man/forest_plot_basic.Rd
man/forest_plot_basic2.Rd
man/format_1_to_many.Rd
man/format_aries_mqtl.Rd
man/format_d.Rd
man/format_data.Rd
man/format_gtex_eqtl.Rd
man/format_gwas_catalog.Rd
man/format_metab_qtls.Rd
man/format_mr_results.Rd
man/format_proteomic_qtls.Rd
man/generate_odds_ratios.Rd
man/get_p_from_r2n.Rd
man/get_population_allele_frequency.Rd
man/get_r_from_bsen.Rd
man/get_r_from_lor.Rd
man/get_r_from_pn.Rd
man/get_se.Rd
man/harmonise_data.Rd
man/harmonise_ld_dat.Rd
man/knit_report.Rd
man/ld_matrix.Rd
man/ldsc_h2.Rd
man/ldsc_h2_internal.Rd
man/ldsc_rg.Rd
man/ldsc_rg_internal.Rd
man/make_dat.Rd
man/mr.Rd
man/mr_density_plot.Rd
man/mr_egger_regression.Rd
man/mr_egger_regression_bootstrap.Rd
man/mr_forest_plot.Rd
man/mr_forest_plot_grouped.Rd
man/mr_funnel_plot.Rd
man/mr_heterogeneity.Rd
man/mr_ivw.Rd
man/mr_ivw_fe.Rd
man/mr_ivw_mre.Rd
man/mr_ivw_radial.Rd
man/mr_leaveoneout.Rd
man/mr_leaveoneout_plot.Rd
man/mr_median.Rd
man/mr_meta_fixed.Rd
man/mr_meta_fixed_simple.Rd
man/mr_meta_random.Rd
man/mr_method_list.Rd
man/mr_mode.Rd
man/mr_moe.Rd
man/mr_penalised_weighted_median.Rd
man/mr_pleiotropy_test.Rd
man/mr_raps.Rd
man/mr_report.Rd
man/mr_rucker.Rd
man/mr_rucker_bootstrap.Rd
man/mr_rucker_cooksdistance.Rd
man/mr_rucker_jackknife.Rd
man/mr_scatter_plot.Rd
man/mr_sign.Rd
man/mr_simple_median.Rd
man/mr_simple_mode.Rd
man/mr_simple_mode_nome.Rd
man/mr_singlesnp.Rd
man/mr_steiger.Rd
man/mr_steiger2.Rd
man/mr_two_sample_ml.Rd
man/mr_uwr.Rd
man/mr_wald_ratio.Rd
man/mr_weighted_median.Rd
man/mr_weighted_mode.Rd
man/mr_weighted_mode_nome.Rd
man/mr_wrapper.Rd
man/mv_basic.Rd
man/mv_extract_exposures.Rd
man/mv_extract_exposures_local.Rd
man/mv_harmonise_data.Rd
man/mv_ivw.Rd
man/mv_lasso_feature_selection.Rd
man/mv_multiple.Rd
man/mv_residual.Rd
man/mv_subset.Rd
man/pipe.Rd
man/power_prune.Rd
man/read_exposure_data.Rd
man/read_outcome_data.Rd
man/run_mr_presso.Rd
man/run_mrmix.Rd
man/simple_cap.Rd
man/size.prune.Rd
man/sort_1_to_many.Rd
man/split_exposure.Rd
man/split_outcome.Rd
man/standardise_units.Rd
man/steiger_filtering.Rd
man/steiger_sensitivity.Rd
man/subset_on_method.Rd
man/trim.Rd
man/weighted_median.Rd
man/weighted_median_bootstrap.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test_add_metadata.r
tests/testthat/test_create_test_data.r
tests/testthat/test_eve.R
tests/testthat/test_harmonise.R
tests/testthat/test_harmonise_edge_cases.R
tests/testthat/test_heterogeneity.R
tests/testthat/test_instruments.R
tests/testthat/test_ld.R
tests/testthat/test_ldsc.R
tests/testthat/test_leaveoneout.R
tests/testthat/test_mvmr.R
tests/testthat/test_mvmr_local.R
tests/testthat/test_otherformats.R
tests/testthat/test_outcomes.R
tests/testthat/test_plots.R
tests/testthat/test_rsq.r
tests/testthat/test_singlesnp.R
tests/testthat/test_steiger.R
vignettes/exposure.Rmd
vignettes/gwas2020.Rmd
vignettes/harmonise.Rmd
vignettes/img/twosamplemr_schematic_long-01.png
vignettes/img/twosamplemr_schematic_long.ai
vignettes/introduction.Rmd
vignettes/outcome.Rmd
vignettes/perform_mr.Rmd
vignettes/refs.bib
