Files in MadsAlbertsen/ampvis2
Tools for visualising amplicon data
.Rbuildignore
.devcontainer/devcontainer.json
.dockerignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/docker-rstudio-server.yml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
Dockerfile
ISSUE_TEMPLATE.md
LICENSE
NAMESPACE
R/amp_alphadiv.R
R/amp_boxplot.R
R/amp_core.R
R/amp_export_fasta.R
R/amp_export_long.R
R/amp_export_otutable.R
R/amp_filter_samples.R
R/amp_filter_taxa.R
R/amp_frequency.R
R/amp_heatmap.R
R/amp_load.R
R/amp_merge_ampvis2.R
R/amp_merge_replicates.R
R/amp_octave.R
R/amp_ordinate.R
R/amp_otu_network.R
R/amp_rankabundance.R
R/amp_rarecurve.R
R/amp_timeseries.R
R/amp_venn.R
R/ampvis2.R
R/data.R
R/deprecated.R
R/internals.R
R/print_methods.R
R/utils-pipe.R
R/zzz.R
README.md
_pkgdown.yml
data/AalborgWWTPs.rda
data/MiDAS.rda
data/example_metadata.rda
data/example_otutable.rda
data/example_taxonomy.rda
data/midasfunctions.rda
inst/CITATION
man/AalborgWWTPs.Rd
man/MiDAS.Rd
man/abundAreCounts.Rd
man/aggregate_abund.Rd
man/amp_alphadiv.Rd
man/amp_boxplot.Rd
man/amp_core.Rd
man/amp_export_fasta.Rd
man/amp_export_long.Rd
man/amp_export_otutable.Rd
man/amp_filter_samples.Rd
man/amp_filter_taxa.Rd
man/amp_frequency.Rd
man/amp_heatmap.Rd
man/amp_import_biom.Rd
man/amp_import_usearch.Rd
man/amp_load.Rd
man/amp_merge_ampvis2.Rd
man/amp_merge_replicates.Rd
man/amp_octave.Rd
man/amp_ordinate.Rd
man/amp_otu_network.Rd
man/amp_rankabundance.Rd
man/amp_rarecurve.Rd
man/amp_rarefy.Rd
man/amp_rename.Rd
man/amp_timeseries.Rd
man/amp_venn.Rd
man/ampvis2.Rd
man/as.data.table.DNAbin.Rd
man/checkReqPkg.Rd
man/dist.JSD.Rd
man/dist.unifrac.Rd
man/dot-onAttach.Rd
man/example_metadata.Rd
man/example_otutable.Rd
man/example_taxonomy.Rd
man/extractFunctions.Rd
man/filter_otus.Rd
man/findOTUcol.Rd
man/getLowestTaxLvl.Rd
man/getMiDASFGData.Rd
man/import.Rd
man/is_ampvis2.Rd
man/matchOTUs.Rd
man/midasfunctions.Rd
man/normaliseTo100.Rd
man/parseTaxonomy.Rd
man/pipe.Rd
man/print.ampvis2.Rd
man/print.coreplot.Rd
man/print.figcaption.Rd
man/print.hmfunplot.Rd
man/tax_levels.Rd
man/unzip_file.Rd
renv.lock
tests/testdata/ASVs.sintax
tests/testdata/ASVtable.tsv
tests/testdata/min_sparse_otu_table.biom
tests/testdata/min_sparse_otu_table_hdf5.biom
tests/testdata/rich_sparse_otu_table.biom
tests/testdata/rich_sparse_otu_table_hdf5.biom
tests/testthat.R
tests/testthat/test-amp_load.R
tests/testthat/test-amp_merge_ampvis2.R
vignettes/ampvis2.Rmd
vignettes/faq.Rmd
vignettes/workflow.png
