Files in MalteThodberg/CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

.Rbuildignore
.gitignore
CAGEfightR.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/aaa.R R/assign.R R/bw.R R/calc.R R/check.R R/cluster.R R/combine.R R/enhancers.R R/example.R R/find.R R/quantify.R R/quick.R R/rowsum2.R R/shape.R R/split.R R/subsetBy.R R/swap.R R/track.R R/trimTo.R R/tune.R R/utils.R R/zzz.R README.md data-raw/example_data.R
data/exampleBidirectional.rda
data/exampleCTSSs.rda
data/exampleDesign.rda
data/exampleGenes.rda
data/exampleUnidirectional.rda
inst/CITATION
inst/NEWS
inst/extdata/mm9.C547.minus.bw
inst/extdata/mm9.C547.plus.bw
inst/extdata/mm9.C548.minus.bw
inst/extdata/mm9.C548.plus.bw
inst/extdata/mm9.C549.minus.bw
inst/extdata/mm9.C549.plus.bw
man/assignGeneID.Rd man/assignMissingID.Rd man/assignTxID.Rd man/assignTxType.Rd man/balanceBC.Rd man/balanceD.Rd man/bwCommonGenome.Rd man/bwGenomeCompatibility.Rd man/bwValid.Rd man/calcBidirectionality.Rd man/calcComposition.Rd man/calcPooled.Rd man/calcShape.Rd man/calcSupport.Rd man/calcTPM.Rd man/calcTotalTags.Rd man/checkPeaked.Rd man/checkPooled.Rd man/clusterBidirectionally.Rd man/clusterUnidirectionally.Rd man/combineClusters.Rd man/exampleDesign.Rd man/findLinks.Rd man/findStretches.Rd man/quantifyCTSSs.Rd man/quantifyClusters.Rd man/quantifyGenes.Rd man/quickEnhancers.Rd man/quickTSSs.Rd man/shapeEntropy.Rd man/shapeIQR.Rd man/shapeMultimodality.Rd man/subsetByBidirectionality.Rd man/subsetByComposition.Rd man/subsetBySupport.Rd man/swapRanges.Rd man/swapScores.Rd man/trackBalance.Rd man/trackCTSS.Rd man/trackClusters.Rd man/trackLinks.Rd man/trimToPeak.Rd man/trimToPercentiles.Rd man/tuneTagClustering.Rd vignettes/Introduction_to_CAGEfightR.Rmd
MalteThodberg/CAGEfightR documentation built on March 14, 2019, 10:56 p.m.