data.SNP: Multiple genes dataset

Description Usage Format Value Source

Description

A case-control dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients (266 individuals affected by Rheumatoid Arthritis and 163 Health controls)

Usage

1

Format

A list with 3 objects:

snpX

SnpMatrix object with 312 SNPs and 429 individuals.

genes.info

a data frame where each SNP is described by its rs ID, its position and the gene it belongs to.

Y

Factor vector of length 429 with 2 levels ("Health Control or "Rheumatoid"). Y correspond to the case-control status response variable.

Value

A dataset containing the genotypes of 312 SNPs from 17 genes in a total of 429 patients.

Source

All three objects were taken from NCBI web site and are part of the GSE39428 series Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.


MathieuEmily/GeneGeneInteR documentation built on Jan. 13, 2018, 6:55 a.m.