Man pages for MingChen0919/gtgr
Interact with a Galaxy Tool Generator (GTG) platform
| extract_gtg_info | This function extracts GTG containers information. |
| extract_short_flags | 'extract_short_flags' extract short flag letters from XML... |
| extract_xml_variable_names | 'extract_xml_variable_names' extract variable names... |
| galaxy2gtg | 'gtg2galaxy' copy files in GTG galaxy tool repository... |
| get_gtg_directory | Get the working directory given a GTG name. |
| getopt_specification_matrix | 'getopt_specification_matrix' returns a getopt specification... |
| get_tool_sh_command | 'get_tool_sh_command' generates the tool_name.sh file in the... |
| gtg2galaxy | 'gtg2galaxy' copy files in GTG galaxy tool repository... |
| init_render_r | 'init_render_r' creates a template render R script file with... |
| list_gtg | 'list_gtg' returns a data frame which contains all GTG... |
| remove_galaxy | 'remove_galaxy' removes a stopped Galaxy instaince. If the... |
| remove_gtg | 'remove_gtg' removes a stopped GTG. If the GTG is running, it... |
| restart_galaxy | 'restart_galaxy' restarts a stopped GTG. |
| restart_gtg | 'restart_gtg' restarts a stopped GTG. |
| start_galaxy | Launch a galaxy instance for testing tools. |
| start_gtg | 'start_gtg' starts a new GTG platform for Galaxy tool... |
| stop_galaxy | 'stop_galaxy' stops a Galaxy instance. |
| stop_gtg | 'stop_gtg' stops a running GTG platform. |
| update_gtg_image | 'update_gtg_image' pulls the latest GTG docker images. |
| update_gtg_modules | Update GTG modules |
