Man pages for MingChen0919/gtgr
Interact with a Galaxy Tool Generator (GTG) platform

extract_gtg_infoThis function extracts GTG containers information.
extract_short_flags'extract_short_flags' extract short flag letters from XML...
extract_xml_variable_names'extract_xml_variable_names' extract variable names...
galaxy2gtg'gtg2galaxy' copy files in GTG galaxy tool repository...
get_gtg_directoryGet the working directory given a GTG name.
getopt_specification_matrix'getopt_specification_matrix' returns a getopt specification...
get_tool_sh_command'get_tool_sh_command' generates the tool_name.sh file in the...
gtg2galaxy'gtg2galaxy' copy files in GTG galaxy tool repository...
init_render_r'init_render_r' creates a template render R script file with...
list_gtg'list_gtg' returns a data frame which contains all GTG...
remove_galaxy'remove_galaxy' removes a stopped Galaxy instaince. If the...
remove_gtg'remove_gtg' removes a stopped GTG. If the GTG is running, it...
restart_galaxy'restart_galaxy' restarts a stopped GTG.
restart_gtg'restart_gtg' restarts a stopped GTG.
start_galaxyLaunch a galaxy instance for testing tools.
start_gtg'start_gtg' starts a new GTG platform for Galaxy tool...
stop_galaxy'stop_galaxy' stops a Galaxy instance.
stop_gtg'stop_gtg' stops a running GTG platform.
update_gtg_image'update_gtg_image' pulls the latest GTG docker images.
update_gtg_modulesUpdate GTG modules
MingChen0919/gtgr documentation built on April 19, 2018, 12:19 p.m.