Files in MultinomialMutations/MultinomialMutations
Fast multinomial regression for large cancer mutation datasets
DESCRIPTION
MultinomialMutations.Rproj
NAMESPACE
R/.Rhistory
R/cancermutations.R
R/count_table_prep_multinom.R
R/fast_multinom.R
R/loss_function.R
R/make.bdiag.R
R/multiple_imputation.R
R/nested_sum_contrasts.R
R/nested_treatment_contrasts.R
R/pooling.R
R/predict.fast_multinom.R
R/prior_pseudo_counts.R
R/prior_pseudo_counts_preserve_mut.R
R/small_dataprep_functions.R
R/sumstats_original_data.R
R/sumstats_original_data_no_pdf_output.R
R/wrapper_fast_multinom.R
R/wrapper_fast_multinom_binom.R
R/wrapper_loss.R
R/wrapper_loss_binom.R
R/wrapper_multinom_dataprep.R
R/wrapper_prior_pseudo_counts.R
README.md
data-raw/.Rhistory
data-raw/create_cancermutations.R
data/cancermutations.rda
data/chrom21.rda
inst/Bertl_et_al_2017/average_loss.R
inst/Bertl_et_al_2017/dataprep.sh
inst/Bertl_et_al_2017/dirichlet.sh
inst/Bertl_et_al_2017/final.sh
inst/Bertl_et_al_2017/final_all.sh
inst/Bertl_et_al_2017/final_model.R
inst/Bertl_et_al_2017/final_model.Rdata
inst/Bertl_et_al_2017/final_model_without_sample.R
inst/Bertl_et_al_2017/final_model_without_sample.RData
inst/Bertl_et_al_2017/multinom_sumstats_orig.R
inst/Bertl_et_al_2017/run_wrapper_fast_multinom.R
inst/Bertl_et_al_2017/run_wrapper_fast_multinom_binom.R
inst/Bertl_et_al_2017/run_wrapper_loss.R
inst/Bertl_et_al_2017/run_wrapper_loss_binom.R
inst/Bertl_et_al_2017/run_wrapper_multinom_dataprep.R
inst/Bertl_et_al_2017/run_wrapper_prior_pseudo_counts.R
inst/extdata/.Rhistory
inst/extdata/_readme.txt
inst/extdata/create_set0.R
inst/extdata/set0.Rdata
inst/rmd/sumstats_original_data.Rmd
inst/rmd/sumstats_original_data_knit_only.Rmd
man/.Rhistory
man/add_counts.Rd
man/add_counts_pres_mut.Rd
man/cancermutations.Rd
man/chrom21.Rd
man/count_table_prep_multinom.Rd
man/deviance_loss.Rd
man/fast_multinom.Rd
man/make.bdiag.Rd
man/mimp.Rd
man/nested_sum_contrasts.Rd
man/nested_treatment_contrasts.Rd
man/pooling.Rd
man/predict.fast_multinom.Rd
man/sumstats_orig.Rd
man/wrapper_fast_multinom.Rd
man/wrapper_loss.Rd
man/wrapper_multinom_dataprep.Rd
man/wrapper_prior_pseudo_counts.Rd
test/testing_fast_multinom.R
test/testing_nested_treatment_contrasts.R
test/testing_predict.R
