ui.R
In NCAR/Ranadu: Functions for use with RAF aircraft data files
# ui.R
## This is the user interface for the Ranadu shinyApp.
step <- 60
shinyUI(
fluidPage (theme='www/bootstrap.css', ##navbarPage('Explorer', ##fluidPage(
# titlePanel("Explorer"),
# tabPanel ('plot vs time',
# tags$style (type='text/css', '.well {max-height:140px;}'),
## this doesn't work; 115 is F4 key; fix someday
tags$script(HTML("$(function() {
$(document).keyup(function(e) {
if (e.which == 115) {
$('#resetT').click()
}
});
})")),
navlistPanel (tabPanel (strong('data & plot'), fluidRow (
column (4, wellPanel (
fluidRow (
column (3, radioButtons ('SRC', label='AC', choices=c('NCAR', 'UWYO', 'FAAM'),
width='60px', inline=FALSE)),
column (8,
fluidRow (
column (8, selectInput (inputId='Project', label=NULL,
choices=PJ, selected=plotSpec$Project, width='100px')),
column (4, actionButton (inputId='manual', label = 'help'))
)),
fluidRow (
# column (4, downloadButton ('savePDF', label='PDF')), # icon=icon('file-pdf-o'))),
column (4, downloadButton (outputId='savePNG', label='PNG')), # icon=icon('file-image-o'))),
column (4, actionButton (inputId='saveRdata', label='R', icon=icon('file-archive-o')))
)
))),
column (2, wellPanel (
fluidRow (
column (5, numericInput (inputId='Flight', label='Flight', value=1,
min=1, max=99, step=1, width='80px')),
column (3, radioButtons ('typeFlight', label=NULL, choices=c('rf', 'tf', 'ff'),
width='70px', inline=FALSE)),
column (3, radioButtons ('suffixFlight', label=NULL, choices=c('pre', 'Prod.', 'h'), ##, 'Y', 'KF'),
width='70px', inline=FALSE))))),
column (1,
numericInput (inputId='plot', label='plot', value=1,
min=1, max=5, step=1),
actionButton ('check', 'quick')),
column(5, wellPanel (
fluidRow (
column (6, selectInput ('restore', label=NULL, choices=defFiles, selected='plotSpec.def')),
column (6, textInput ('save', label=NULL, value='plotSpec.def'))
),
fluidRow (
column (6, actionButton (inputId='specRead', label='Read Specs')),
column (6, actionButton (inputId='specSave', label='Save Specs'))
)
)))),
# tags$head(
# tags$style(type="text/css", ".irs {max-height:55px;}"),
# tags$style (type='text/css', '.well {max-height:140px;}')
# ),
# tags$head (
# tags$style(type='text/css', 'irs {max-height:55px;')
# # tags$style(type='text/css', 'textinput {max-height:55px;'),
# # tags$style(type='text/css', 'button-text {font-size:12px; height:20px;}'),
# ),
tabPanel (strong('restrictions'),
column(6,
tags$style(type='text/css', '.well {max-height:120px;top:0px'),
wellPanel(
tags$style(type='text/css', 'irs {max-height:53px;'),
sliderInput("times", label=NA, min=plotSpec$Times[1], max=plotSpec$Times[2],
value=plotSpec$Times,
# animate=TRUE,
step=step,
timeFormat='%T', dragRange=TRUE,
timezone='+0000'),
fluidRow (
# column (4, tags$textarea(id = "tstart", rows = "1", cols = "11", value=formatTime(time[1]))), # text input with 10 rows aka lines
# column (4, tags$textarea(id = "t-end", rows = "1", cols = "11")),
column (4,
# tags$style(type="text/css", "input.shiny-bound-input {font-size:12px; height:15px;}"),
textInput ('tstart', label=NULL, value=formatTime(plotSpec$Times[1])),
tags$style(type='text/css', "#tstart {width: 100px; height: 22px; }")),
column (4,
# tags$style(type="text/css", "input.shiny-bound-input {font-size:12px; height:15px;}"),
textInput ('tend', label=NULL, value=formatTime(plotSpec$Times[2])),
tags$style(type='text/css', "#tend {width: 100px; height: 22px; }")),
column (2, shinyBS::bsButton ('resetT', label='reset', size='extra-small')),
column (1, shinyBS::bsButton ('prevT', label=NULL, icon=icon('angle-left'), size='extra-small')),
# tags$style(type='text/css', "#button { vertical-align: middle; height: 15px; width: 100%; font-size: 12px;}")
column (1, shinyBS::bsButton ('nextT', label=NULL, icon=icon('angle-right'), size='extra-small'))
# tags$style(type='text/css', "#button { vertical-align: middle; height: 15px; width: 100%; font-size: 12px;}")
)
)),
column (6, wellPanel ( fluidRow (
# tags$style(type="text/css", "input.shiny-bound-input {font-size:14px; height:30px;}"),
column (2, numericInput ('rvNumber', 'R#', 1)),
column (3, selectInput ('rvar', 'var', choices=c(sort(FI$Variables)),
selected=plotSpec$Restrictions$RVAR[1])),
column (1, '?', checkboxInput ('apply', label=NULL,
value=plotSpec$Restrictions$apply[1])),
column (3, numericInput ('rmin', 'min', plotSpec$Restrictions$min[1])),
column (3, numericInput ('rmax', 'max', plotSpec$Restrictions$max[1]))
)
))), widths=c(2,10)),
bsAlert("pleasewait"),
bsModal("quickCheck", title=NULL, trigger='check', size = "large", plotOutput("quickPlot")),
tabsetPanel (id='whichTab', type='pills',
tabPanel ('plot vs time',
sidebarLayout(
sidebarPanel(h4('define plot'),
fluidRow (
column (6, numericInput ('panels', 'panels',
plotSpec$Plot[[1]]$panels, width='60px')),
column (6, numericInput ('cols', 'cols', plotSpec$Plot[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('panel', 'panel', 1, min=1, max=6,width='50px')),
column (6, checkboxInput ('logY', 'log?'),
checkboxInput ('fixed', 'set ylim?',
value=plotSpec$Plot[[1]]$panel[[1]]$fixed)
)),
fluidRow (
column (6, numericInput ('panelMin', 'min', plotSpec$Plot[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('panelMax', 'max', plotSpec$Plot[[1]]$panel[[1]]$ylim[2]))),
fluidRow (
column (7, checkboxInput ('restrict','apply restrictions', plotSpec$Plot[[1]]$restrict)),
column (5, checkboxInput ('footer','footer?'))),
wellPanel (
fluidRow (
column (2, 'line:'),
column (4, numericInput ('lineV', NULL, 1, width='70px')),
column (2, 'lwd:'),
column (4, numericInput ('lineW', NULL, 1, width='70px'))),
fluidRow (
column (1, 'v:'),
column (11, selectInput ('addVarP', label=NULL,
choices=c('select', 'omit', sort(FI$Variables)),
selected=plotSpec$Plot[[1]]$panel[[1]]$var[1]))),
fluidRow(
column (1, 'l:'),
column (11, textInput ('ylbl', label=NULL, value=plotSpec$Plot[[1]]$panel[[1]]$var[1]))),
selectInput ('varColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
# fluidRow (
# column (6, 'width:'),
# column (6, numericInput ('lineW', NULL, 1, width='90px'))),
fluidRow (
column (6, radioButtons ('lineStyle', label='line type', choices=ltyps, inline=TRUE,
selected=ltyps[plotSpec$Plot[[1]]$panel[[1]]$lt[1]],
width='90px')),
column (6, checkboxInput ('smooth','smooth?', plotSpec$Plot[[1]]$panel[[1]]$smooth[1]),
numericInput ('SGpoints', 'SG pts', plotSpec$Plot[[1]]$panel[[1]]$SGlength[1])
))),
width=3),
mainPanel( tabsetPanel (tabPanel ('plots', plotOutput (outputId='display', click=clickOpts(id='plot_click'),
brush=brushOpts(id='plot_brush', delay=3000, delayType='debounce', resetOnNew=TRUE))),
tabPanel ('stats', dataTableOutput ('stats')),
tabPanel ('histograms', plotOutput (outputId='hist')),
tabPanel ('soundings', plotOutput (outputId='barWvsZ')),
tabPanel ('listing', dataTableOutput ('listing')),
tabPanel ('checkV', h2('1-min averages centered on listed time'),
textInput ('RefT', label=NULL, value=formatTime(checkTime)),
dataTableOutput ('checkV')),
id='display')
))
# ),
# tabPanel ('track')
),
tabPanel ('track',
sidebarLayout(
sidebarPanel(h4('track definition'),
checkboxInput ('limits2','apply restrictions'),
checkboxInput ('footer2', 'footer?'),
checkboxInput ('drift', 'drifting?'),
numericInput ('track.xc', 'center long.', value=NULL),
numericInput ('track.yc', 'center lat.', value=NULL),
numericInput ('track.sz', 'size (deg.', value=NULL),
numericInput ('track.spacing', 'time between labels (min)', 15),
numericInput ('track.WF', 'scale for wind flags', 5),
width=2),
mainPanel( tabsetPanel (tabPanel ('plan view', plotOutput (outputId='track')),
tabPanel ('time-height', plotOutput ('theight'))
)))
),
tabPanel ('stats/listing',
sidebarLayout(
sidebarPanel(h4('stats/listing definition'),
checkboxInput ('limits2a','apply restrictions'),
actionButton ('statVariables', 'select variables'),
radioButtons ('statslist', label='type of output', choices=c('stats', 'listing')),
numericInput ('avgsec', label='for listing, ave. seconds:', value=1, min=1),
width=2),
mainPanel(dataTableOutput ('statistics')))
),
navbarMenu ('more plots',
tabPanel ('histogram',
sidebarLayout(
sidebarPanel(h4('histogram definition'),
fluidRow (
column (6, checkboxInput ('limits3','apply restrictions')),
column (6, checkboxInput ('densityH', 'plot density?'))
),
fluidRow (
column (6, checkboxInput ('cdf', 'include CDF')),
column (6, checkboxInput ('hfooter','footer? (NA)'))),
fluidRow (
column (6, numericInput ('hpanels', 'panels',
plotSpec$Hist[[1]]$panels, width='60px')),
column (6, numericInput ('hcols', 'cols', plotSpec$Hist[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (4, numericInput ('hpanel', 'panel', 1, min=1, max=5,width='50px')),
column (4, numericInput ('hbins', 'bins', 50, min=10)),
column (4, checkboxInput ('hlogY', 'log? (NA)'),
checkboxInput ('hfixed', 'set xlim?',
value=plotSpec$Hist[[1]]$panel[[1]]$fixed)
)),
fluidRow (
column (6, numericInput ('hpanelMin', 'xmin', plotSpec$Hist[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('hpanelMax', 'xmax', plotSpec$Hist[[1]]$panel[[1]]$ylim[2]))),
wellPanel (
fluidRow (
column (6, h4('line:')),
column (6, numericInput ('hlineV', NULL, 1, width='90px'))),
selectInput ('haddVarP', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Hist[[1]]$panel[[1]]$var[1]),
selectInput ('hvarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'width:'),
column (6, numericInput ('hlineW', NULL, 1, width='90px'))),
radioButtons ('hlineStyle', label='line type', choices=ltyps, inline=TRUE,
selected=ltyps[plotSpec$Hist[[1]]$panel[[1]]$lt[1]],
width='90px')),
width=3),
mainPanel(plotOutput (outputId='histogram')))
),
tabPanel ('scatterplot',
sidebarLayout(
sidebarPanel(h4('scatterplot'),
fluidRow (
column (5, checkboxInput ('limits4','restrictions')),
column (6, checkboxInput ('ssmooth','smoothed display? (1st pair only)'))),
fluidRow (
column (6, numericInput ('spanels', 'panels',
plotSpec$Scat[[1]]$panels, width='60px')),
column (6, numericInput ('scols', 'cols', plotSpec$Scat[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('spanel', 'panel', 1, min=1, max=5,width='50px')),
column (6, checkboxInput ('slogX', 'log x?'),
checkboxInput ('slogY', 'log y?'),
checkboxInput ('sfixed', 'fixed?',
value=plotSpec$Scat[[1]]$panel[[1]]$fixed)
)),
wellPanel (
fluidRow (
column (5, h4('pair:')),
column (7, numericInput ('slineV', NULL, 1, width='90px'))),
fluidRow (
column (2, 'x'),
column (10, selectInput ('saddVarP1', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Scat[[1]]$panel[[1]]$varx))),
fluidRow (
column (2, 'y'),
column (10, selectInput ('saddVarP2', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Scat[[1]]$panel[[1]]$vary[1]))),
selectInput ('svarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'symbol size:'),
column (6, numericInput ('ssize', NULL, 1, width='90px'))),
numericInput ('symbol', 'symbol', plotSpec$Scat[[1]]$panel[[1]]$symbol[1], width='90px'),
fluidRow (
column (6, numericInput ('spanelMinx', 'xmin', plotSpec$Scat[[1]]$panel[[1]]$xlim[1])),
column (6, numericInput ('spanelMaxx', 'xmax', plotSpec$Scat[[1]]$panel[[1]]$xlim[2]))),
fluidRow (
column (6, numericInput ('spanelMiny', 'ymin', plotSpec$Scat[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('spanelMaxy', 'ymax', plotSpec$Scat[[1]]$panel[[1]]$ylim[2])))),
width=3),
mainPanel(plotOutput (outputId='scatterplot')))
),
tabPanel ('bin-average plots',
sidebarLayout(
sidebarPanel(h4('bin averages'),
checkboxInput ('limits5','apply restrictions'),
fluidRow (
column (5, checkboxInput ('bfooter','footer? (NA)'))),
fluidRow (
column (6, numericInput ('bpanels', 'panels',
plotSpec$Bin[[1]]$panels, width='60px')),
column (6, numericInput ('bcols', 'cols', plotSpec$Bin[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('bpanel', 'panel', 1, min=1, max=5,width='50px'),
checkboxInput ('bhoriz', 'horizontal?')),
column (6, checkboxInput ('blogX', 'log x?'),
checkboxInput ('blogY', 'log y?'),
checkboxInput ('bfixed', 'fixed?',
value=plotSpec$Bin[[1]]$panel[[1]]$fixed)
)),
wellPanel (
fluidRow (
column (5, h4('pair:')),
column (7, numericInput ('blineV', NULL, 1, width='90px'))),
fluidRow (
column (2, 'x'),
column (10, selectInput ('baddVarP1', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Bin[[1]]$panel[[1]]$varx))),
fluidRow (
column (2, 'y'),
column (10, selectInput ('baddVarP2', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Bin[[1]]$panel[[1]]$vary[1]))),
selectInput ('bvarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'symbol size:'),
column (6, numericInput ('bsize', NULL, 1, width='90px'))),
numericInput ('bsymbol', 'symbol', plotSpec$Bin[[1]]$panel[[1]]$symbol[1], width='90px'),
fluidRow (
column (6, numericInput ('bpanelMinx', 'xmin', plotSpec$Bin[[1]]$panel[[1]]$xlim[1])),
column (6, numericInput ('bpanelMaxx', 'xmax', plotSpec$Bin[[1]]$panel[[1]]$xlim[2]))),
fluidRow (
column (6, numericInput ('bpanelMiny', 'ymin', plotSpec$Bin[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('bpanelMaxy', 'ymax', plotSpec$Bin[[1]]$panel[[1]]$ylim[2])))),
width=3),
mainPanel(plotOutput (outputId='binplot')))
)),
navbarMenu ('particles',
tabPanel ('size distributions',
sidebarLayout(
sidebarPanel(h4('define size distributions'),
fluidRow(
column(6, checkboxInput ('limits7','restrictions?')),
column(3, checkboxInput ('LWC', 'LWC?')),
column(3, checkboxInput ('addcdf', 'CDF?'))
),
selectInput ('sdtype', 'type of axes',
choices=c('linear', 'log-y', 'log-x', 'both log'),
selected='both log'),
checkboxGroupInput ('probe', 'probe?', c('CDP', 'FSSP', 'UHSAS', 'PCASP', '2DC'),
selected='CDP'),
width=2),
mainPanel(plotOutput (outputId='sdplot')))
),
tabPanel ('hydrometeor images',
sidebarLayout (
sidebarPanel (h4('2D probe images'),
actionButton ('fname2d', 'select input file'),
textInput ('fnametext', 'file selected:', value=plotSpec$fname2d),
radioButtons ('mode2d', 'type of display:',
choices=c('record', 'page', 'second (max)', 'image')),
fluidRow (
column (7, 'min. seconds between displayed records:'),
column (5, numericInput ('max2d', label=NULL, value=0, min=0, width='200px'))),
shinyBS::bsButton ('prev2d', label=NULL, icon=icon('angle-left'), size='small'),
shinyBS::bsButton ('next2d', label=NULL, icon=icon('angle-right'), size='small'),
width=3),
mainPanel(plotOutput (outputId='image2d'))))),
navbarMenu ('thermo. diagrams',
tabPanel ('skewT diagram',
sidebarLayout(
sidebarPanel(h4('skew-T definition'),
checkboxInput ('limits6', 'apply restrictions'),
numericInput ('sndbins', 'bins for sounding', value=50, min=20, max=1000),
checkboxInput ('hodograph', 'show hodograph?'),
checkboxInput ('cape', 'CAPE / LCL / adiabats?'),
checkboxInput ('footer6', 'footer?'),
width=2),
mainPanel(plotOutput (outputId='skewT')))
),
tabPanel ('mixing and stability plots',
sidebarLayout(
sidebarPanel (h4('Paluch / sat.-point, stability diagrams'),
checkboxInput ('limits9', 'apply restrictions'),
selectInput ('paluchBetts', label=NULL, choices=c('Paluch', 'Betts sat. point', 'stability profiles')),
h4('sounding times:'),
fluidRow (
column (6, textInput ('paluchStart', label=NULL, value=formatTime (plotSpec$PaluchTimes[1]))),
column (6, textInput ('paluchEnd', label=NULL, value=formatTime (plotSpec$PaluchTimes[2])))
),
fluidRow (
column (2, 'bins:'),
column (4, numericInput ('nbsa', label=NULL, value=18, min=5, width='70px')),
column (2, 'avg:'),
column (4, numericInput ('nbss', label=NULL, value=7, min=5, width='70px'))
),
selectInput('paluchLWC', 'LWC variable', choices=c(sort(FI$Variables)),
selected=plotSpec$paluchLWC),
h4('in-cloud times for mixing diagrams:'),
fluidRow (
column (6, textInput ('paluchCStart', label=NULL, value=formatTime (plotSpec$PaluchCTimes[1]))),
column (6, textInput ('paluchCEnd', label=NULL, value=formatTime (plotSpec$PaluchCTimes[2])))
),
h4 ('variable for stability profiles:'),
radioButtons ('tvORthetap', label=NULL, choices=c('THETAV', 'THETAP'), inline=TRUE),
width=4),
mainPanel (plotOutput (outputId='paluch')))
)
),
tabPanel ('variance spectra',
sidebarLayout(
sidebarPanel(h4('spectral analysis'),
fluidRow(
column(4, checkboxInput ('limits8','apply restrictions')),
column(5, selectInput ('varTheme', label='theme', choices=Themes)),
column(3, checkboxInput ('varXanadu', label='Xanadu?', value=FALSE))),
selectInput('specvar', 'variable', choices=c(sort(FI$Variables)),
selected=plotSpec$Variance[[1]]$Definition$var),
selectInput('speccovar', 'co-variable', choices=c(sort(FI$Variables)),
selected=plotSpec$Variance[[1]]$Definition$cvar),
tabsetPanel (type='pills',
tabPanel ('fft-spectrum',
fluidRow (
column(6, selectInput ('ffttype1', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both fp(f)',
'cospec. / quad.', 'coherence / phase', 'edr-weighted', 'AllanVariance', 'data'))),
column(3, numericInput ('spans', 'spans (should be odd)', 49))),
fluidRow (
column (6, selectInput ('FFTcolor1', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(3, numericInput ('fftavg1', 'log avg intervals', plotSpec$Variance[[1]]$Definition$fftavg)),
column(3, checkboxInput ('ffterrbar1', 'error bars?'))),
sliderInput("fftedrRange1", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('FFTadd1', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('FFTshowU1', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('FFTcaption1', 'show caption', value=TRUE)))),
tabPanel ('fft-Welch',
fluidRow (
column(6, selectInput ('ffttype', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both fp(f)',
'cospec. / quad.', 'coherence / phase', 'edr-weighted', 'AllanVariance', 'data'))),
column(3, numericInput ('fftpts', 'segment length (s)', plotSpec$Variance[[1]]$Definition$fftpts)),
column(3, selectInput ('fftwindow', label=NULL, choices=c('Parzen', 'square', 'Welch', 'Hanning')))),
fluidRow (
column (6, selectInput ('FFTcolor', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(3, numericInput ('fftavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$fftavg)),
column(3, checkboxInput ('ffterrbar', 'error bars?'))),
sliderInput("fftedrRange", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('FFTadd', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('FFTshowU', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('FFTcaption', 'show caption', value=TRUE)))),
tabPanel ('acv',
checkboxInput ('acvdetrend', 'remove trend?', value=TRUE),
selectInput ('acvtype', label=NULL, choices=c('fp(f)', 'p(f)', 'var2 fp(f)', 'var2 p(f)',
'autocorrelation', 'crosscorrelation', 'data')),
numericInput ('acvtau', 'smoothing time', plotSpec$Variance[[1]]$Definition$acvtau),
numericInput ('acvavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$acvavg)),
tabPanel ('MEM',
fluidRow (
column(6, selectInput ('MEMtype', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both',
'cospec./quadrature', 'coherence/phase',
'edr-weighted', 'data'))),
column(3, numericInput ('MEMpoles', 'poles', plotSpec$Variance[[1]]$Definition$MEMpoles)),
column(3, numericInput ('MEMres', 'resoln', plotSpec$Variance[[1]]$Definition$MEMres))),
fluidRow (
column(6, selectInput ('MEMcolor', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(6, numericInput ('MEMavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$MEMavg))),
sliderInput("MEMedrRange", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('MEMadd', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('MEMshowU', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('MEMcaption', 'show caption', value=TRUE)))
), id='spectype'),
width=3),
mainPanel(plotOutput (outputId='varplot')))
),
navbarMenu ('utilities',
tabPanel ('run other programs',
selectInput ('otherprogram', label=NULL,
choices=c('ncplot', 'Xanadu', 'Excel', 'python',
'NCL', 'IDL', 'IDV')),
checkboxInput ('limits10','apply restrictions'),
actionButton ('xfrVariables', 'select variables'),
actionButton ('ncplot', 'start program')),
tabPanel ('fits to data',
sidebarLayout (
sidebarPanel (h4('linear fits'),
checkboxInput ('limitsFit', 'apply restrictions?', value=TRUE),
selectInput ('response', label='response variable',
choices=sort(VarList)),
helpText(h4('formula use:'),
'the fit formula can take several forms:',
tags$ul(
tags$li('a single variable'),
tags$li('multiple variables separated by + signs (e.g., A+B)'),
tags$li('additional expressions enclosed in isolating expressions ',
tags$strong('+I()'),', where the enclosed formula may',
'use operations like *, /, etc., or ^ for powers (e.g., A^2 for the square of A)'),
tags$li('you can also use new variables previously defined by the utility \"create new variable\"')
)),
textInput ('fformula', 'fit formula (example shown)', placeholder='I(ADIFR/QCF)+I(MACHX^3)'),
actionButton ('lfit', 'show linear fit'),
actionButton ('dfit', 'show Deming fit')
),
mainPanel (plotOutput (outputId='fitplot'),
htmlOutput (outputId='fittext'),
tableOutput (outputId='coeftable'))
)),
tabPanel ('create new variable',
actionButton ('createV', 'create new variable'),
helpText (h4('Usage:'),
'Provide a name for the new variable,',
'then give a formula for calculating it. The',
'formula can use names of existing variables',
'if they are separated by spaces from other',
'text or numbers, and it can use standard',
'math operations like +-*/ or math functions',
'like sin(). An example is shown. Click the',
'top button once the formula is ready.',
h4('Warning:'), 'If the',
'variable already exists it will be replaced.'),
textInput ('newvar', 'name of new variable', value='AOAREF'),
textInput ('formla', 'formula for new variable',
value='PITCH - GGVSPD / TASX * 180 / pi')))
)
)
)
NCAR/Ranadu documentation built on Jan. 27, 2023, 1:09 a.m.
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# ui.R
## This is the user interface for the Ranadu shinyApp.
step <- 60
shinyUI(
fluidPage (theme='www/bootstrap.css', ##navbarPage('Explorer', ##fluidPage(
# titlePanel("Explorer"),
# tabPanel ('plot vs time',
# tags$style (type='text/css', '.well {max-height:140px;}'),
## this doesn't work; 115 is F4 key; fix someday
tags$script(HTML("$(function() {
$(document).keyup(function(e) {
if (e.which == 115) {
$('#resetT').click()
}
});
})")),
navlistPanel (tabPanel (strong('data & plot'), fluidRow (
column (4, wellPanel (
fluidRow (
column (3, radioButtons ('SRC', label='AC', choices=c('NCAR', 'UWYO', 'FAAM'),
width='60px', inline=FALSE)),
column (8,
fluidRow (
column (8, selectInput (inputId='Project', label=NULL,
choices=PJ, selected=plotSpec$Project, width='100px')),
column (4, actionButton (inputId='manual', label = 'help'))
)),
fluidRow (
# column (4, downloadButton ('savePDF', label='PDF')), # icon=icon('file-pdf-o'))),
column (4, downloadButton (outputId='savePNG', label='PNG')), # icon=icon('file-image-o'))),
column (4, actionButton (inputId='saveRdata', label='R', icon=icon('file-archive-o')))
)
))),
column (2, wellPanel (
fluidRow (
column (5, numericInput (inputId='Flight', label='Flight', value=1,
min=1, max=99, step=1, width='80px')),
column (3, radioButtons ('typeFlight', label=NULL, choices=c('rf', 'tf', 'ff'),
width='70px', inline=FALSE)),
column (3, radioButtons ('suffixFlight', label=NULL, choices=c('pre', 'Prod.', 'h'), ##, 'Y', 'KF'),
width='70px', inline=FALSE))))),
column (1,
numericInput (inputId='plot', label='plot', value=1,
min=1, max=5, step=1),
actionButton ('check', 'quick')),
column(5, wellPanel (
fluidRow (
column (6, selectInput ('restore', label=NULL, choices=defFiles, selected='plotSpec.def')),
column (6, textInput ('save', label=NULL, value='plotSpec.def'))
),
fluidRow (
column (6, actionButton (inputId='specRead', label='Read Specs')),
column (6, actionButton (inputId='specSave', label='Save Specs'))
)
)))),
# tags$head(
# tags$style(type="text/css", ".irs {max-height:55px;}"),
# tags$style (type='text/css', '.well {max-height:140px;}')
# ),
# tags$head (
# tags$style(type='text/css', 'irs {max-height:55px;')
# # tags$style(type='text/css', 'textinput {max-height:55px;'),
# # tags$style(type='text/css', 'button-text {font-size:12px; height:20px;}'),
# ),
tabPanel (strong('restrictions'),
column(6,
tags$style(type='text/css', '.well {max-height:120px;top:0px'),
wellPanel(
tags$style(type='text/css', 'irs {max-height:53px;'),
sliderInput("times", label=NA, min=plotSpec$Times[1], max=plotSpec$Times[2],
value=plotSpec$Times,
# animate=TRUE,
step=step,
timeFormat='%T', dragRange=TRUE,
timezone='+0000'),
fluidRow (
# column (4, tags$textarea(id = "tstart", rows = "1", cols = "11", value=formatTime(time[1]))), # text input with 10 rows aka lines
# column (4, tags$textarea(id = "t-end", rows = "1", cols = "11")),
column (4,
# tags$style(type="text/css", "input.shiny-bound-input {font-size:12px; height:15px;}"),
textInput ('tstart', label=NULL, value=formatTime(plotSpec$Times[1])),
tags$style(type='text/css', "#tstart {width: 100px; height: 22px; }")),
column (4,
# tags$style(type="text/css", "input.shiny-bound-input {font-size:12px; height:15px;}"),
textInput ('tend', label=NULL, value=formatTime(plotSpec$Times[2])),
tags$style(type='text/css', "#tend {width: 100px; height: 22px; }")),
column (2, shinyBS::bsButton ('resetT', label='reset', size='extra-small')),
column (1, shinyBS::bsButton ('prevT', label=NULL, icon=icon('angle-left'), size='extra-small')),
# tags$style(type='text/css', "#button { vertical-align: middle; height: 15px; width: 100%; font-size: 12px;}")
column (1, shinyBS::bsButton ('nextT', label=NULL, icon=icon('angle-right'), size='extra-small'))
# tags$style(type='text/css', "#button { vertical-align: middle; height: 15px; width: 100%; font-size: 12px;}")
)
)),
column (6, wellPanel ( fluidRow (
# tags$style(type="text/css", "input.shiny-bound-input {font-size:14px; height:30px;}"),
column (2, numericInput ('rvNumber', 'R#', 1)),
column (3, selectInput ('rvar', 'var', choices=c(sort(FI$Variables)),
selected=plotSpec$Restrictions$RVAR[1])),
column (1, '?', checkboxInput ('apply', label=NULL,
value=plotSpec$Restrictions$apply[1])),
column (3, numericInput ('rmin', 'min', plotSpec$Restrictions$min[1])),
column (3, numericInput ('rmax', 'max', plotSpec$Restrictions$max[1]))
)
))), widths=c(2,10)),
bsAlert("pleasewait"),
bsModal("quickCheck", title=NULL, trigger='check', size = "large", plotOutput("quickPlot")),
tabsetPanel (id='whichTab', type='pills',
tabPanel ('plot vs time',
sidebarLayout(
sidebarPanel(h4('define plot'),
fluidRow (
column (6, numericInput ('panels', 'panels',
plotSpec$Plot[[1]]$panels, width='60px')),
column (6, numericInput ('cols', 'cols', plotSpec$Plot[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('panel', 'panel', 1, min=1, max=6,width='50px')),
column (6, checkboxInput ('logY', 'log?'),
checkboxInput ('fixed', 'set ylim?',
value=plotSpec$Plot[[1]]$panel[[1]]$fixed)
)),
fluidRow (
column (6, numericInput ('panelMin', 'min', plotSpec$Plot[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('panelMax', 'max', plotSpec$Plot[[1]]$panel[[1]]$ylim[2]))),
fluidRow (
column (7, checkboxInput ('restrict','apply restrictions', plotSpec$Plot[[1]]$restrict)),
column (5, checkboxInput ('footer','footer?'))),
wellPanel (
fluidRow (
column (2, 'line:'),
column (4, numericInput ('lineV', NULL, 1, width='70px')),
column (2, 'lwd:'),
column (4, numericInput ('lineW', NULL, 1, width='70px'))),
fluidRow (
column (1, 'v:'),
column (11, selectInput ('addVarP', label=NULL,
choices=c('select', 'omit', sort(FI$Variables)),
selected=plotSpec$Plot[[1]]$panel[[1]]$var[1]))),
fluidRow(
column (1, 'l:'),
column (11, textInput ('ylbl', label=NULL, value=plotSpec$Plot[[1]]$panel[[1]]$var[1]))),
selectInput ('varColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
# fluidRow (
# column (6, 'width:'),
# column (6, numericInput ('lineW', NULL, 1, width='90px'))),
fluidRow (
column (6, radioButtons ('lineStyle', label='line type', choices=ltyps, inline=TRUE,
selected=ltyps[plotSpec$Plot[[1]]$panel[[1]]$lt[1]],
width='90px')),
column (6, checkboxInput ('smooth','smooth?', plotSpec$Plot[[1]]$panel[[1]]$smooth[1]),
numericInput ('SGpoints', 'SG pts', plotSpec$Plot[[1]]$panel[[1]]$SGlength[1])
))),
width=3),
mainPanel( tabsetPanel (tabPanel ('plots', plotOutput (outputId='display', click=clickOpts(id='plot_click'),
brush=brushOpts(id='plot_brush', delay=3000, delayType='debounce', resetOnNew=TRUE))),
tabPanel ('stats', dataTableOutput ('stats')),
tabPanel ('histograms', plotOutput (outputId='hist')),
tabPanel ('soundings', plotOutput (outputId='barWvsZ')),
tabPanel ('listing', dataTableOutput ('listing')),
tabPanel ('checkV', h2('1-min averages centered on listed time'),
textInput ('RefT', label=NULL, value=formatTime(checkTime)),
dataTableOutput ('checkV')),
id='display')
))
# ),
# tabPanel ('track')
),
tabPanel ('track',
sidebarLayout(
sidebarPanel(h4('track definition'),
checkboxInput ('limits2','apply restrictions'),
checkboxInput ('footer2', 'footer?'),
checkboxInput ('drift', 'drifting?'),
numericInput ('track.xc', 'center long.', value=NULL),
numericInput ('track.yc', 'center lat.', value=NULL),
numericInput ('track.sz', 'size (deg.', value=NULL),
numericInput ('track.spacing', 'time between labels (min)', 15),
numericInput ('track.WF', 'scale for wind flags', 5),
width=2),
mainPanel( tabsetPanel (tabPanel ('plan view', plotOutput (outputId='track')),
tabPanel ('time-height', plotOutput ('theight'))
)))
),
tabPanel ('stats/listing',
sidebarLayout(
sidebarPanel(h4('stats/listing definition'),
checkboxInput ('limits2a','apply restrictions'),
actionButton ('statVariables', 'select variables'),
radioButtons ('statslist', label='type of output', choices=c('stats', 'listing')),
numericInput ('avgsec', label='for listing, ave. seconds:', value=1, min=1),
width=2),
mainPanel(dataTableOutput ('statistics')))
),
navbarMenu ('more plots',
tabPanel ('histogram',
sidebarLayout(
sidebarPanel(h4('histogram definition'),
fluidRow (
column (6, checkboxInput ('limits3','apply restrictions')),
column (6, checkboxInput ('densityH', 'plot density?'))
),
fluidRow (
column (6, checkboxInput ('cdf', 'include CDF')),
column (6, checkboxInput ('hfooter','footer? (NA)'))),
fluidRow (
column (6, numericInput ('hpanels', 'panels',
plotSpec$Hist[[1]]$panels, width='60px')),
column (6, numericInput ('hcols', 'cols', plotSpec$Hist[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (4, numericInput ('hpanel', 'panel', 1, min=1, max=5,width='50px')),
column (4, numericInput ('hbins', 'bins', 50, min=10)),
column (4, checkboxInput ('hlogY', 'log? (NA)'),
checkboxInput ('hfixed', 'set xlim?',
value=plotSpec$Hist[[1]]$panel[[1]]$fixed)
)),
fluidRow (
column (6, numericInput ('hpanelMin', 'xmin', plotSpec$Hist[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('hpanelMax', 'xmax', plotSpec$Hist[[1]]$panel[[1]]$ylim[2]))),
wellPanel (
fluidRow (
column (6, h4('line:')),
column (6, numericInput ('hlineV', NULL, 1, width='90px'))),
selectInput ('haddVarP', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Hist[[1]]$panel[[1]]$var[1]),
selectInput ('hvarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'width:'),
column (6, numericInput ('hlineW', NULL, 1, width='90px'))),
radioButtons ('hlineStyle', label='line type', choices=ltyps, inline=TRUE,
selected=ltyps[plotSpec$Hist[[1]]$panel[[1]]$lt[1]],
width='90px')),
width=3),
mainPanel(plotOutput (outputId='histogram')))
),
tabPanel ('scatterplot',
sidebarLayout(
sidebarPanel(h4('scatterplot'),
fluidRow (
column (5, checkboxInput ('limits4','restrictions')),
column (6, checkboxInput ('ssmooth','smoothed display? (1st pair only)'))),
fluidRow (
column (6, numericInput ('spanels', 'panels',
plotSpec$Scat[[1]]$panels, width='60px')),
column (6, numericInput ('scols', 'cols', plotSpec$Scat[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('spanel', 'panel', 1, min=1, max=5,width='50px')),
column (6, checkboxInput ('slogX', 'log x?'),
checkboxInput ('slogY', 'log y?'),
checkboxInput ('sfixed', 'fixed?',
value=plotSpec$Scat[[1]]$panel[[1]]$fixed)
)),
wellPanel (
fluidRow (
column (5, h4('pair:')),
column (7, numericInput ('slineV', NULL, 1, width='90px'))),
fluidRow (
column (2, 'x'),
column (10, selectInput ('saddVarP1', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Scat[[1]]$panel[[1]]$varx))),
fluidRow (
column (2, 'y'),
column (10, selectInput ('saddVarP2', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Scat[[1]]$panel[[1]]$vary[1]))),
selectInput ('svarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'symbol size:'),
column (6, numericInput ('ssize', NULL, 1, width='90px'))),
numericInput ('symbol', 'symbol', plotSpec$Scat[[1]]$panel[[1]]$symbol[1], width='90px'),
fluidRow (
column (6, numericInput ('spanelMinx', 'xmin', plotSpec$Scat[[1]]$panel[[1]]$xlim[1])),
column (6, numericInput ('spanelMaxx', 'xmax', plotSpec$Scat[[1]]$panel[[1]]$xlim[2]))),
fluidRow (
column (6, numericInput ('spanelMiny', 'ymin', plotSpec$Scat[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('spanelMaxy', 'ymax', plotSpec$Scat[[1]]$panel[[1]]$ylim[2])))),
width=3),
mainPanel(plotOutput (outputId='scatterplot')))
),
tabPanel ('bin-average plots',
sidebarLayout(
sidebarPanel(h4('bin averages'),
checkboxInput ('limits5','apply restrictions'),
fluidRow (
column (5, checkboxInput ('bfooter','footer? (NA)'))),
fluidRow (
column (6, numericInput ('bpanels', 'panels',
plotSpec$Bin[[1]]$panels, width='60px')),
column (6, numericInput ('bcols', 'cols', plotSpec$Bin[[1]]$columns, min=1, width='60px'))),
fluidRow (
column (6, numericInput ('bpanel', 'panel', 1, min=1, max=5,width='50px'),
checkboxInput ('bhoriz', 'horizontal?')),
column (6, checkboxInput ('blogX', 'log x?'),
checkboxInput ('blogY', 'log y?'),
checkboxInput ('bfixed', 'fixed?',
value=plotSpec$Bin[[1]]$panel[[1]]$fixed)
)),
wellPanel (
fluidRow (
column (5, h4('pair:')),
column (7, numericInput ('blineV', NULL, 1, width='90px'))),
fluidRow (
column (2, 'x'),
column (10, selectInput ('baddVarP1', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Bin[[1]]$panel[[1]]$varx))),
fluidRow (
column (2, 'y'),
column (10, selectInput ('baddVarP2', label=NULL,
choices=c('select', 'omit',sort(FI$Variables)),
selected=plotSpec$Bin[[1]]$panel[[1]]$vary[1]))),
selectInput ('bvarColor', NULL, c('blue', 'darkgreen', 'red',
'cyan', 'violet', 'darkorange',
'brown', 'black')),
fluidRow (
column (6, 'symbol size:'),
column (6, numericInput ('bsize', NULL, 1, width='90px'))),
numericInput ('bsymbol', 'symbol', plotSpec$Bin[[1]]$panel[[1]]$symbol[1], width='90px'),
fluidRow (
column (6, numericInput ('bpanelMinx', 'xmin', plotSpec$Bin[[1]]$panel[[1]]$xlim[1])),
column (6, numericInput ('bpanelMaxx', 'xmax', plotSpec$Bin[[1]]$panel[[1]]$xlim[2]))),
fluidRow (
column (6, numericInput ('bpanelMiny', 'ymin', plotSpec$Bin[[1]]$panel[[1]]$ylim[1])),
column (6, numericInput ('bpanelMaxy', 'ymax', plotSpec$Bin[[1]]$panel[[1]]$ylim[2])))),
width=3),
mainPanel(plotOutput (outputId='binplot')))
)),
navbarMenu ('particles',
tabPanel ('size distributions',
sidebarLayout(
sidebarPanel(h4('define size distributions'),
fluidRow(
column(6, checkboxInput ('limits7','restrictions?')),
column(3, checkboxInput ('LWC', 'LWC?')),
column(3, checkboxInput ('addcdf', 'CDF?'))
),
selectInput ('sdtype', 'type of axes',
choices=c('linear', 'log-y', 'log-x', 'both log'),
selected='both log'),
checkboxGroupInput ('probe', 'probe?', c('CDP', 'FSSP', 'UHSAS', 'PCASP', '2DC'),
selected='CDP'),
width=2),
mainPanel(plotOutput (outputId='sdplot')))
),
tabPanel ('hydrometeor images',
sidebarLayout (
sidebarPanel (h4('2D probe images'),
actionButton ('fname2d', 'select input file'),
textInput ('fnametext', 'file selected:', value=plotSpec$fname2d),
radioButtons ('mode2d', 'type of display:',
choices=c('record', 'page', 'second (max)', 'image')),
fluidRow (
column (7, 'min. seconds between displayed records:'),
column (5, numericInput ('max2d', label=NULL, value=0, min=0, width='200px'))),
shinyBS::bsButton ('prev2d', label=NULL, icon=icon('angle-left'), size='small'),
shinyBS::bsButton ('next2d', label=NULL, icon=icon('angle-right'), size='small'),
width=3),
mainPanel(plotOutput (outputId='image2d'))))),
navbarMenu ('thermo. diagrams',
tabPanel ('skewT diagram',
sidebarLayout(
sidebarPanel(h4('skew-T definition'),
checkboxInput ('limits6', 'apply restrictions'),
numericInput ('sndbins', 'bins for sounding', value=50, min=20, max=1000),
checkboxInput ('hodograph', 'show hodograph?'),
checkboxInput ('cape', 'CAPE / LCL / adiabats?'),
checkboxInput ('footer6', 'footer?'),
width=2),
mainPanel(plotOutput (outputId='skewT')))
),
tabPanel ('mixing and stability plots',
sidebarLayout(
sidebarPanel (h4('Paluch / sat.-point, stability diagrams'),
checkboxInput ('limits9', 'apply restrictions'),
selectInput ('paluchBetts', label=NULL, choices=c('Paluch', 'Betts sat. point', 'stability profiles')),
h4('sounding times:'),
fluidRow (
column (6, textInput ('paluchStart', label=NULL, value=formatTime (plotSpec$PaluchTimes[1]))),
column (6, textInput ('paluchEnd', label=NULL, value=formatTime (plotSpec$PaluchTimes[2])))
),
fluidRow (
column (2, 'bins:'),
column (4, numericInput ('nbsa', label=NULL, value=18, min=5, width='70px')),
column (2, 'avg:'),
column (4, numericInput ('nbss', label=NULL, value=7, min=5, width='70px'))
),
selectInput('paluchLWC', 'LWC variable', choices=c(sort(FI$Variables)),
selected=plotSpec$paluchLWC),
h4('in-cloud times for mixing diagrams:'),
fluidRow (
column (6, textInput ('paluchCStart', label=NULL, value=formatTime (plotSpec$PaluchCTimes[1]))),
column (6, textInput ('paluchCEnd', label=NULL, value=formatTime (plotSpec$PaluchCTimes[2])))
),
h4 ('variable for stability profiles:'),
radioButtons ('tvORthetap', label=NULL, choices=c('THETAV', 'THETAP'), inline=TRUE),
width=4),
mainPanel (plotOutput (outputId='paluch')))
)
),
tabPanel ('variance spectra',
sidebarLayout(
sidebarPanel(h4('spectral analysis'),
fluidRow(
column(4, checkboxInput ('limits8','apply restrictions')),
column(5, selectInput ('varTheme', label='theme', choices=Themes)),
column(3, checkboxInput ('varXanadu', label='Xanadu?', value=FALSE))),
selectInput('specvar', 'variable', choices=c(sort(FI$Variables)),
selected=plotSpec$Variance[[1]]$Definition$var),
selectInput('speccovar', 'co-variable', choices=c(sort(FI$Variables)),
selected=plotSpec$Variance[[1]]$Definition$cvar),
tabsetPanel (type='pills',
tabPanel ('fft-spectrum',
fluidRow (
column(6, selectInput ('ffttype1', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both fp(f)',
'cospec. / quad.', 'coherence / phase', 'edr-weighted', 'AllanVariance', 'data'))),
column(3, numericInput ('spans', 'spans (should be odd)', 49))),
fluidRow (
column (6, selectInput ('FFTcolor1', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(3, numericInput ('fftavg1', 'log avg intervals', plotSpec$Variance[[1]]$Definition$fftavg)),
column(3, checkboxInput ('ffterrbar1', 'error bars?'))),
sliderInput("fftedrRange1", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('FFTadd1', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('FFTshowU1', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('FFTcaption1', 'show caption', value=TRUE)))),
tabPanel ('fft-Welch',
fluidRow (
column(6, selectInput ('ffttype', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both fp(f)',
'cospec. / quad.', 'coherence / phase', 'edr-weighted', 'AllanVariance', 'data'))),
column(3, numericInput ('fftpts', 'segment length (s)', plotSpec$Variance[[1]]$Definition$fftpts)),
column(3, selectInput ('fftwindow', label=NULL, choices=c('Parzen', 'square', 'Welch', 'Hanning')))),
fluidRow (
column (6, selectInput ('FFTcolor', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(3, numericInput ('fftavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$fftavg)),
column(3, checkboxInput ('ffterrbar', 'error bars?'))),
sliderInput("fftedrRange", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('FFTadd', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('FFTshowU', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('FFTcaption', 'show caption', value=TRUE)))),
tabPanel ('acv',
checkboxInput ('acvdetrend', 'remove trend?', value=TRUE),
selectInput ('acvtype', label=NULL, choices=c('fp(f)', 'p(f)', 'var2 fp(f)', 'var2 p(f)',
'autocorrelation', 'crosscorrelation', 'data')),
numericInput ('acvtau', 'smoothing time', plotSpec$Variance[[1]]$Definition$acvtau),
numericInput ('acvavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$acvavg)),
tabPanel ('MEM',
fluidRow (
column(6, selectInput ('MEMtype', label=NULL, choices=c('fp(f)', 'p(f)', 'co-variable fp(f)', 'both',
'cospec./quadrature', 'coherence/phase',
'edr-weighted', 'data'))),
column(3, numericInput ('MEMpoles', 'poles', plotSpec$Variance[[1]]$Definition$MEMpoles)),
column(3, numericInput ('MEMres', 'resoln', plotSpec$Variance[[1]]$Definition$MEMres))),
fluidRow (
column(6, selectInput ('MEMcolor', 'color', choices=c('blue', 'darkgreen', 'red', 'cyan', 'darkorange', 'brown', 'magenta', 'black'))),
column(6, numericInput ('MEMavg', 'log avg intervals', plotSpec$Variance[[1]]$Definition$MEMavg))),
sliderInput("MEMedrRange", label='for EDR plot, freq range:', min=0.05, max=12.5,
value=c(0.1,8), step=0.01),
fluidRow(
column(3, checkboxInput ('MEMadd', 'add to prev. plot', value=FALSE)),
column(6, checkboxInput ('MEMshowU', 'show unsmoothed spectrum', value=FALSE)),
column(3, checkboxInput ('MEMcaption', 'show caption', value=TRUE)))
), id='spectype'),
width=3),
mainPanel(plotOutput (outputId='varplot')))
),
navbarMenu ('utilities',
tabPanel ('run other programs',
selectInput ('otherprogram', label=NULL,
choices=c('ncplot', 'Xanadu', 'Excel', 'python',
'NCL', 'IDL', 'IDV')),
checkboxInput ('limits10','apply restrictions'),
actionButton ('xfrVariables', 'select variables'),
actionButton ('ncplot', 'start program')),
tabPanel ('fits to data',
sidebarLayout (
sidebarPanel (h4('linear fits'),
checkboxInput ('limitsFit', 'apply restrictions?', value=TRUE),
selectInput ('response', label='response variable',
choices=sort(VarList)),
helpText(h4('formula use:'),
'the fit formula can take several forms:',
tags$ul(
tags$li('a single variable'),
tags$li('multiple variables separated by + signs (e.g., A+B)'),
tags$li('additional expressions enclosed in isolating expressions ',
tags$strong('+I()'),', where the enclosed formula may',
'use operations like *, /, etc., or ^ for powers (e.g., A^2 for the square of A)'),
tags$li('you can also use new variables previously defined by the utility \"create new variable\"')
)),
textInput ('fformula', 'fit formula (example shown)', placeholder='I(ADIFR/QCF)+I(MACHX^3)'),
actionButton ('lfit', 'show linear fit'),
actionButton ('dfit', 'show Deming fit')
),
mainPanel (plotOutput (outputId='fitplot'),
htmlOutput (outputId='fittext'),
tableOutput (outputId='coeftable'))
)),
tabPanel ('create new variable',
actionButton ('createV', 'create new variable'),
helpText (h4('Usage:'),
'Provide a name for the new variable,',
'then give a formula for calculating it. The',
'formula can use names of existing variables',
'if they are separated by spaces from other',
'text or numbers, and it can use standard',
'math operations like +-*/ or math functions',
'like sin(). An example is shown. Click the',
'top button once the formula is ready.',
h4('Warning:'), 'If the',
'variable already exists it will be replaced.'),
textInput ('newvar', 'name of new variable', value='AOAREF'),
textInput ('formla', 'formula for new variable',
value='PITCH - GGVSPD / TASX * 180 / pi')))
)
)
)
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