Man pages for NGSwenson/lefse_0.5
Phylogenetic and Functional Analyses for Ecology

com.trait.momentscom.trait.moments
com.trait.weightedQuantifies the moments of the community trait distribution...
FmntdFunctional NND
Fmntd.aFunctional NND with abundance
FmpdFunctional MPD no with abundance
Fmpd.aFunctional MPD with abundance
FsntdFunctional standard deviation of the NND
lefse.phyloCommunity phylogeny for lefse
lefse.sampleCommunity data matrix for lefse
lefse.traitsExample trait dataset for lefse
new.comdistQuantifies the mean pairwise functional distance between...
new.comdistnnQuantifies the mean nearest functional neighbor between...
new.comdistnn.nullQuantifies a random mean nearest functional neighbor between...
new.comdistnn.primeQuantifies the mean nearest functional neighbor between...
new.comdistnn.prime.nullQuantifies a random mean nearest functional neighbor between...
new.comdist.nullQuantifies a random mean pairwise functional distance between...
new.comdist.primeQuantifies the mean pairwise functional distance between...
new.comdist.prime.nullQuantifies a random mean pairwise functional distance between...
rank.abund.fricCumulative Functional Richness (FRic) across rank abundance...
rank.abund.fric.nullRandom cumulative Functional Richness (FRic) across rank...
rank.abund.pdCumulative PD across rank abundance distribution
rank.abund.pd.nullRandom cumulative PD across rank abundance distribution
sntd.aFunctional standard deviation of the NND with abundance...
trait.rangeRange of trait values in a community
weighted.faithAbundance weighted calculation of Faiths PD index
NGSwenson/lefse_0.5 documentation built on May 9, 2017, 1:16 p.m.