Man pages for NGSwenson/lefse_0.5
Phylogenetic and Functional Analyses for Ecology
| com.trait.moments | com.trait.moments |
| com.trait.weighted | Quantifies the moments of the community trait distribution... |
| Fmntd | Functional NND |
| Fmntd.a | Functional NND with abundance |
| Fmpd | Functional MPD no with abundance |
| Fmpd.a | Functional MPD with abundance |
| Fsntd | Functional standard deviation of the NND |
| lefse.phylo | Community phylogeny for lefse |
| lefse.sample | Community data matrix for lefse |
| lefse.traits | Example trait dataset for lefse |
| new.comdist | Quantifies the mean pairwise functional distance between... |
| new.comdistnn | Quantifies the mean nearest functional neighbor between... |
| new.comdistnn.null | Quantifies a random mean nearest functional neighbor between... |
| new.comdistnn.prime | Quantifies the mean nearest functional neighbor between... |
| new.comdistnn.prime.null | Quantifies a random mean nearest functional neighbor between... |
| new.comdist.null | Quantifies a random mean pairwise functional distance between... |
| new.comdist.prime | Quantifies the mean pairwise functional distance between... |
| new.comdist.prime.null | Quantifies a random mean pairwise functional distance between... |
| rank.abund.fric | Cumulative Functional Richness (FRic) across rank abundance... |
| rank.abund.fric.null | Random cumulative Functional Richness (FRic) across rank... |
| rank.abund.pd | Cumulative PD across rank abundance distribution |
| rank.abund.pd.null | Random cumulative PD across rank abundance distribution |
| sntd.a | Functional standard deviation of the NND with abundance... |
| trait.range | Range of trait values in a community |
| weighted.faith | Abundance weighted calculation of Faiths PD index |
