inst/GNSplex.gui/result_report.md

In NPhogat/GNSplex: An R package for analysis of the data of gold nanoparticles based singleplex bioassay

Analysis of the data of lateral flow assay

Date: 2018-11-29 19:32:47

Initial Data:

|Replicate | Control| Test| Conc| |:---------|---------:|--------:|----:| |R1 | 3.655782| 18.23130| 0| |R1 | 2.723397| 15.03921| 1| |R1 | 2.238912| 19.25371| 5| |R2 | 3.249296| 16.32562| 10| |R2 | 3.340175| 17.10187| 15| |R2 | 3.008933| 16.99386| 20| |R3 | 2.806054| 20.21449| 25| |R3 | 3.629589| 17.90752| 30| |R3 | 2.102740| 18.41913| 40| |R4 | 3.405054| 17.68823| 60| |R4 | 4.081180| 19.50425| 80| |R4 | 4.078539| 18.41547| 100| |R5 | 4.197044| 19.65837| NA| |R5 | 4.059418| 18.33676| NA| |R5 | 4.437953| 19.20935| NA| |R6 | 4.971660| 18.93552| NA| |R6 | 4.446953| 18.47677| NA| |R6 | 4.951368| 20.44071| NA| |R7 | 5.718853| 19.27906| NA| |R7 | 5.731489| 20.85752| NA| |R7 | 6.069196| 22.00054| NA| |R8 | 8.272924| 24.29020| NA| |R8 | 5.319196| 23.12944| NA| |R8 | 5.757125| 17.42850| NA| |R9 | 9.160681| 20.03211| NA| |R9 | 8.568974| 19.74645| NA| |R9 | 9.643167| 22.69484| NA| |R10 | 15.171359| 23.87086| NA| |R10 | 15.102894| 23.21654| NA| |R10 | 14.302702| 23.22196| NA| |R11 | 17.204823| 21.00291| NA| |R11 | 16.489409| 21.02323| NA| |R11 | 18.676359| 22.04011| NA| |R12 | 21.782673| 19.89194| NA| |R12 | 15.729409| 24.47032| NA| |R12 | 20.421966| 19.25157| NA|

Combined replicates:

| | NI.crep| SI.crep| NI.sdns| SI.sdns| NI.sd| SI.sd| Concn| |:---|---------:|--------:|---------:|---------:|---------:|---------:|-----:| |R1 | 0.1659645| 6.369595| 0.0441078| 1.9496828| 0.7201375| 2.1983646| 0| |R2 | 0.1904670| 5.264070| 0.0117589| 0.3357500| 0.1711503| 0.4204692| 1| |R3 | 0.1518866| 6.965743| 0.0456872| 1.9239974| 0.7642129| 1.2115543| 5| |R4 | 0.2077410| 4.829661| 0.0145433| 0.3425561| 0.3896014| 0.9139887| 10| |R5 | 0.2219704| 4.509793| 0.0087807| 0.1778300| 0.1916015| 0.6720202| 15| |R6 | 0.2484887| 4.030638| 0.0122085| 0.1926719| 0.2972551| 1.0273880| 20| |R7 | 0.2824312| 3.545068| 0.0123130| 0.1507916| 0.1987234| 1.3665367| 25| |R8 | 0.3002967| 3.437232| 0.0611159| 0.7903209| 1.5940272| 3.6726693| 30| |R9 | 0.4387186| 2.281541| 0.0167152| 0.0856780| 0.5380211| 1.6260737| 40| |R10 | 0.6339986| 1.578082| 0.0173578| 0.0433794| 0.4829699| 0.3762146| 60| |R11 | 0.8169623| 1.225273| 0.0315767| 0.0475840| 1.1150475| 0.5930489| 80| |R12 | 0.9328802| 1.137198| 0.2518040| 0.3627374| 3.1757839| 2.8462553| 100|

Normalized Intensity Plot (Standardized Intensity vs Concentration):

Standardized Intensity Plot (Normalized Intensity vs Concentration):

95% Confidence Interval:

| Min.Value| Max.Value| |---------:|---------:| | 0.2283117| 0.5369893| | 2.6426789| 4.8863038|

95% Confidence Interval:

| Min.Value| Max.Value| |---------:|---------:| | 0.2283117| 0.5369893| | 2.6426789| 4.8863038|

Correlation:

| NI_cor| SI_cor| |--------:|---------:| | 0.989628| 0.9088938|

LOD_First Method:

| lod_ni| loq_ni| lod_si| loq_si| |---------:|---------:|-------:|--------:| | 0.2982879| 0.6070426| 2.22541| 4.764572|

LOD_Second Method:

| lob_ni| lod_ni| loq_ni| lob_si| lod_si| loq_si| |---------:|---------:|---------:|--------:|--------:|--------:| | 0.2385218| 0.2578652| 0.6070426| 1.733901| 1.812177| 4.764572|

Calculated Concentration:

| x| |--:| | 0|

Settings used during implementation:

Select the type of file: .txt

Intensity value: 1

Slope value: 1

Intercept value: 1

Session Information:

R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale: [1] LC_COLLATE=English_Germany.1252 LC_CTYPE=English_Germany.1252 [3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C [5] LC_TIME=English_Germany.1252

attached base packages: character(0)

other attached packages: [1] GNSplex_0.1.0

loaded via a namespace (and not attached): [1] tidyselect_0.2.4 locfit_1.5-9.1 purrr_0.2.5 [4] lattice_0.20-35 colorspace_1.3-2 htmltools_0.3.6 [7] yaml_2.2.0 grDevices_3.5.1 rlang_0.2.2 [10] pillar_1.3.0 later_0.7.5 glue_1.3.0 [13] withr_2.1.2 EBImage_4.22.1 BiocGenerics_0.26.0 [16] RColorBrewer_1.1-2 bindrcpp_0.2.2 jpeg_0.1-8 [19] bindr_0.1.1 plyr_1.8.4 stringr_1.3.1 [22] munsell_0.5.0 gtable_0.2.0 htmlwidgets_1.2 [25] evaluate_0.11 labeling_0.3 Biobase_2.40.0 [28] knitr_1.20 httpuv_1.4.5 parallel_3.5.1 [31] markdown_0.8 highr_0.7 methods_3.5.1 [34] Rcpp_0.12.18 xtable_1.8-3 polynom_1.3-9 [37] ggpmisc_0.3.0 scales_1.0.0 promises_1.0.1 [40] jsonlite_1.5 abind_1.4-5 mime_0.5 [43] ggplot2_3.0.0 stats_3.5.1 datasets_3.5.1 [46] graphics_3.5.1 png_0.1-7 digest_0.6.17 [49] stringi_1.1.7 tiff_0.1-5 dplyr_0.7.6 [52] shiny_1.1.0 grid_3.5.1 tools_3.5.1 [55] bitops_1.0-6 magrittr_1.5 lazyeval_0.2.1 [58] RCurl_1.95-4.11 tibble_1.4.2 crayon_1.3.4 [61] pkgconfig_2.0.2 utils_3.5.1 assertthat_0.2.0 [64] base_3.5.1 rstudioapi_0.7 R6_2.2.2 [67] fftwtools_0.9-8 compiler_3.5.1

NPhogat/GNSplex documentation built on May 8, 2020, 9:28 p.m.