R/Z0_BridgeR_core.r
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool
Defines functions
BridgeRCore
BridgeRHKGenes
BridgeRCustom
BridgeRHalfLifeCalc
BridgeRCompare
BridgeRCompareFig
Documented in
BridgeRCompare
BridgeRCompareFig
BridgeRCore
BridgeRCustom
BridgeRHalfLifeCalc
BridgeRHKGenes
#Title: BridgeR_Core
#Auther: Naoto Imamachi
#ver: 1.0.0
#Date: 2015-11-05
BridgeRCore <- function(InputFiles,
InforColumn=4,
group,
hour,
RPKMcutoff=0.1,
RelRPKMFig=F,
SelectNormFactor=T,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"
){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
BridgeRNormalizationFactors(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
YMin=-2,
YMax=2,
MakeFig=RelRPKMFig,
figname="BridgeR_3_Normalizaion_factor",
nfname="BridgeR_3_Normalizaion_factor")
BridgeRNormalization(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
SelectNormFactor=SelectNormFactor,
NormFactor="BridgeR_3_Normalizaion_factor",
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = ModelMode)
}
BridgeRHKGenes <- function(InputFiles,
InforColumn=4,
InforHKGenes=2,
HKGenes=c("GAPDH","PGK1","PPIA","ENO1","ATP5B","ALDOA"),
group,
hour,
RPKMcutoff=0.1,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
BridgeRNormalizationFactorsHK(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
InforHKGenes=InforHKGenes,
HKGenes=HKGenes,
OutputFile="BridgeR_3_Normalizaion_factor_HouseKeepingGenes.txt")
BridgeRNormalizationForLuc2(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
NormFactor="BridgeR_3_Normalizaion_factor_HouseKeepingGenes.txt", OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = ModelMode)
}
BridgeRCustom <- function(YourNormFactor,
SelectNormFactor=F,
InputFiles,
InforColumn=4,
group,
hour,
RPKMcutoff=0.1,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
if(SelectNormFactor == F){
BridgeRNormalizationForLuc2(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
NormFactor=YourNormFactor,
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
}else if(SelectNormFactor == T){
BridgeRNormalization(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
SelectNormFactor=SelectNormFactor,
NormFactor="BridgeR_3_Normalizaion_factor",
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
}
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = "R2_selection")
}
BridgeRHalfLifeCalc <- function(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = 4,
group,
hour,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp = 0.001,
ModelMode = "R2_selection"){
if(ModelMode == "Raw_model"){
BridgeRHalfLifeCalcRaw(filename=InputFiles,
group=group,
hour=hour,
InforColumn=InforColumn,
CutoffRelExp=CutoffRelExp,
CutoffDataPoint=CutoffDataPointNumber,
OutputFile="BridgeR_5_HalfLife_calculation_Raw.txt")
}else if(ModelMode == "Three_model"){
BridgeRHalfLifeCalcModel3(filename = InputFiles,
group = group,
hour = hour,
InforColumn = InforColumn,
CutoffRelExp = CutoffRelExp,
CutoffDataPoint = CutoffDataPointNumber,
OutputFile = "BridgeR_5B_HalfLife_calculation_3model.txt")
}else if(ModelMode == "R2_selection"){
BridgeRHalfLifeCalcR2Select(InputFile = InputFiles,
group = group,
hour = hour,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")
}else{
print("ERROR: Defined wrong ModelMode...")
print("Choose the following ModelMode: Raw_model, Three_model, R2_selection.")
}
}
BridgeRCompare <- function(InputFile="BridgeR_5C_HalfLife_calculation_R2_selection.txt",
InforColumn = 4,
group,
hour,
ComparisonFile,
CutoffDataPointNumber = 4,
ModelMode="R2_selection",
Calibration=F){
outputfile_name <- NULL
if(ModelMode == "Three_model"){
if(Calibration == T){
outputfile_name <- "BridgeR_6_Calibrated_HalfLife_calculation_3model.txt"
BridgeRHalfLifeCalibration(InputFile = "BridgeR_5B_HalfLife_calculation_3model.txt",
group = group,
hour = hour,
ComparisonFile = ComparisonFile,
InforColumn = InforColumn,
OutputFile = "BridgeR_6_Calibrated_HalfLife_calculation_3model.txt")
}else if(Calibration == F){
outputfile_name <- InputFile
}
}else if(ModelMode == "Raw_model" || ModelMode == "R2_selection"){
if(Calibration == T){
outputfile_name <- "BridgeR_6B_Calibrated_HalfLife_Pvalue_estimation.txt"
BridgeRPvalueEvaluation(InputFile=InputFile,
group,
hour,
ComparisonFile,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
OutputFile=outputfile_name,
Calibration=Calibration)
}else if(Calibration == F){
outputfile_name <- "BridgeR_6_HalfLife_Pvalue_estimation.txt"
BridgeRPvalueEvaluation(InputFile=InputFile,
group,
hour,
ComparisonFile,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
OutputFile=outputfile_name,
Calibration=Calibration)
}
}
BridgeRCompareFig(InputFile=outputfile_name,
InforColumn = InforColumn,
group = group,
hour = hour,
ComparisonFile = ComparisonFile,
ModelMode=ModelMode)
}
BridgeRCompareFig <- function(InputFile="BridgeR_6_HalfLife_Pvalue_estimation.txt",
InforColumn = 4,
group,
hour,
ComparisonFile,
ModelMode="R2_selection"){
BridgeRHalfLifeComparison(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
LogScale=F,
OutputFig="BridgeR_7_HalfLife_Comparison_ScatteredPlot",
ModelMode = ModelMode)
BridgeRHalfLifeDistribution(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
OutputFig="BridgeR_7_HalfLife_Distribution_LineGraph",
ModelMode = ModelMode)
BridgeRHalfLifeDifferenceHist(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
BinwidthFig=0.01,
OutputFig="BridgeR_7_HalfLife_Difference_LineGraph",
ModelMode = ModelMode)
BridgeRHalfLifeDifferenceBox(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
OutputFig= "BridgeR_7_HalfLife_Comparison_BoxPlot",
ModelMode = ModelMode)
}
Naoto-Imamachi/BridgeR documentation built on May 7, 2019, 6:05 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Defines functions BridgeRCore BridgeRHKGenes BridgeRCustom BridgeRHalfLifeCalc BridgeRCompare BridgeRCompareFig
Documented in BridgeRCompare BridgeRCompareFig BridgeRCore BridgeRCustom BridgeRHalfLifeCalc BridgeRHKGenes
#Title: BridgeR_Core
#Auther: Naoto Imamachi
#ver: 1.0.0
#Date: 2015-11-05
BridgeRCore <- function(InputFiles,
InforColumn=4,
group,
hour,
RPKMcutoff=0.1,
RelRPKMFig=F,
SelectNormFactor=T,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"
){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
BridgeRNormalizationFactors(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
YMin=-2,
YMax=2,
MakeFig=RelRPKMFig,
figname="BridgeR_3_Normalizaion_factor",
nfname="BridgeR_3_Normalizaion_factor")
BridgeRNormalization(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
SelectNormFactor=SelectNormFactor,
NormFactor="BridgeR_3_Normalizaion_factor",
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = ModelMode)
}
BridgeRHKGenes <- function(InputFiles,
InforColumn=4,
InforHKGenes=2,
HKGenes=c("GAPDH","PGK1","PPIA","ENO1","ATP5B","ALDOA"),
group,
hour,
RPKMcutoff=0.1,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
BridgeRNormalizationFactorsHK(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
InforHKGenes=InforHKGenes,
HKGenes=HKGenes,
OutputFile="BridgeR_3_Normalizaion_factor_HouseKeepingGenes.txt")
BridgeRNormalizationForLuc2(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
NormFactor="BridgeR_3_Normalizaion_factor_HouseKeepingGenes.txt", OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = ModelMode)
}
BridgeRCustom <- function(YourNormFactor,
SelectNormFactor=F,
InputFiles,
InforColumn=4,
group,
hour,
RPKMcutoff=0.1,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp=0.001,
ModelMode="R2_selection"){
BridgeRDataSetFromCuffnorm(CuffnormFiles=InputFiles,
group=group,
hour=hour,
cutoff=RPKMcutoff,
InforColumn=InforColumn,
OutputFile="BridgeR_1_Relative_expression_dataset.txt")
BridgeRDatasetChecker(InputFile="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_2_Relative_RPKM_distribution")
if(SelectNormFactor == F){
BridgeRNormalizationForLuc2(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
NormFactor=YourNormFactor,
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
}else if(SelectNormFactor == T){
BridgeRNormalization(filename="BridgeR_1_Relative_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
SelectNormFactor=SelectNormFactor,
NormFactor="BridgeR_3_Normalizaion_factor",
OutputFile="BridgeR_4_Normalized_expression_dataset.txt")
}
BridgeRDatasetChecker(InputFile="BridgeR_4_Normalized_expression_dataset.txt",
group=group,
hour=hour,
InforColumn=InforColumn,
OutputFile="BridgeR_4B_Normalized_RPKM_distribution")
BridgeRHalfLifeCalc(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = InforColumn,
group = group,
hour = hour,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
CutoffRelExp = CutoffRelExp,
ModelMode = "R2_selection")
}
BridgeRHalfLifeCalc <- function(InputFiles = "BridgeR_4_Normalized_expression_dataset.txt",
InforColumn = 4,
group,
hour,
CutoffDataPointNumber = 4,
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12),
ThresholdHalfLife = c(8,12),
CutoffRelExp = 0.001,
ModelMode = "R2_selection"){
if(ModelMode == "Raw_model"){
BridgeRHalfLifeCalcRaw(filename=InputFiles,
group=group,
hour=hour,
InforColumn=InforColumn,
CutoffRelExp=CutoffRelExp,
CutoffDataPoint=CutoffDataPointNumber,
OutputFile="BridgeR_5_HalfLife_calculation_Raw.txt")
}else if(ModelMode == "Three_model"){
BridgeRHalfLifeCalcModel3(filename = InputFiles,
group = group,
hour = hour,
InforColumn = InforColumn,
CutoffRelExp = CutoffRelExp,
CutoffDataPoint = CutoffDataPointNumber,
OutputFile = "BridgeR_5B_HalfLife_calculation_3model.txt")
}else if(ModelMode == "R2_selection"){
BridgeRHalfLifeCalcR2Select(InputFile = InputFiles,
group = group,
hour = hour,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
CutoffDataPoint1 = CutoffDataPoint1,
CutoffDataPoint2 = CutoffDataPoint2,
ThresholdHalfLife = ThresholdHalfLife,
OutputFile = "BridgeR_5C_HalfLife_calculation_R2_selection.txt")
}else{
print("ERROR: Defined wrong ModelMode...")
print("Choose the following ModelMode: Raw_model, Three_model, R2_selection.")
}
}
BridgeRCompare <- function(InputFile="BridgeR_5C_HalfLife_calculation_R2_selection.txt",
InforColumn = 4,
group,
hour,
ComparisonFile,
CutoffDataPointNumber = 4,
ModelMode="R2_selection",
Calibration=F){
outputfile_name <- NULL
if(ModelMode == "Three_model"){
if(Calibration == T){
outputfile_name <- "BridgeR_6_Calibrated_HalfLife_calculation_3model.txt"
BridgeRHalfLifeCalibration(InputFile = "BridgeR_5B_HalfLife_calculation_3model.txt",
group = group,
hour = hour,
ComparisonFile = ComparisonFile,
InforColumn = InforColumn,
OutputFile = "BridgeR_6_Calibrated_HalfLife_calculation_3model.txt")
}else if(Calibration == F){
outputfile_name <- InputFile
}
}else if(ModelMode == "Raw_model" || ModelMode == "R2_selection"){
if(Calibration == T){
outputfile_name <- "BridgeR_6B_Calibrated_HalfLife_Pvalue_estimation.txt"
BridgeRPvalueEvaluation(InputFile=InputFile,
group,
hour,
ComparisonFile,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
OutputFile=outputfile_name,
Calibration=Calibration)
}else if(Calibration == F){
outputfile_name <- "BridgeR_6_HalfLife_Pvalue_estimation.txt"
BridgeRPvalueEvaluation(InputFile=InputFile,
group,
hour,
ComparisonFile,
InforColumn = InforColumn,
CutoffDataPointNumber = CutoffDataPointNumber,
OutputFile=outputfile_name,
Calibration=Calibration)
}
}
BridgeRCompareFig(InputFile=outputfile_name,
InforColumn = InforColumn,
group = group,
hour = hour,
ComparisonFile = ComparisonFile,
ModelMode=ModelMode)
}
BridgeRCompareFig <- function(InputFile="BridgeR_6_HalfLife_Pvalue_estimation.txt",
InforColumn = 4,
group,
hour,
ComparisonFile,
ModelMode="R2_selection"){
BridgeRHalfLifeComparison(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
LogScale=F,
OutputFig="BridgeR_7_HalfLife_Comparison_ScatteredPlot",
ModelMode = ModelMode)
BridgeRHalfLifeDistribution(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
OutputFig="BridgeR_7_HalfLife_Distribution_LineGraph",
ModelMode = ModelMode)
BridgeRHalfLifeDifferenceHist(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
BinwidthFig=0.01,
OutputFig="BridgeR_7_HalfLife_Difference_LineGraph",
ModelMode = ModelMode)
BridgeRHalfLifeDifferenceBox(filename=InputFile,
InforColumn=4,
group=group,
hour=hour,
ComparisonFile=ComparisonFile,
OutputFig= "BridgeR_7_HalfLife_Comparison_BoxPlot",
ModelMode = ModelMode)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.