filter_by_orthologs: Filter CellTypeDataset
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
filter_by_orthologs R Documentation
Filter CellTypeDataset
Description
Filter CellTypeDataset (CTD)
specificity and mean_exp from CTD list to only keep a subset of genes.
Usage
filter_by_orthologs(ctd_oneLevel, one2one_ortholog_symbols)
Arguments
ctd_oneLevel
A single level of a CTD
one2one_ortholog_symbols
character expansion for the text.
Details
Created so that lapply can be used to do this.
Value
The CTD with both specificity and mean
expression matrices filtered to only contain 1:1 ortholog genes.
Source
ctd <- ewceData::ctd()
orths <- ewceData::mouse_to_human_homologs()
ctd2 <- lapply(ctd, filter_by_orthologs, orths$MGI.symbol)
NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.
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| filter_by_orthologs | R Documentation |
Filter CellTypeDataset
Description
Filter CellTypeDataset (CTD) specificity and mean_exp from CTD list to only keep a subset of genes.
Usage
filter_by_orthologs(ctd_oneLevel, one2one_ortholog_symbols)
Arguments
ctd_oneLevel |
A single level of a CTD |
one2one_ortholog_symbols |
character expansion for the text. |
Details
Created so that lapply can be used to do this.
Value
The CTD with both specificity and mean expression matrices filtered to only contain 1:1 ortholog genes.
Source
ctd <- ewceData::ctd()
orths <- ewceData::mouse_to_human_homologs()
ctd2 <- lapply(ctd, filter_by_orthologs, orths$MGI.symbol)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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