Man pages for OHDSI/Cyclops
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

aconfintAsymptotic confidence intervals for a fitted Cyclops model...
appendSqlCyclopsDataappendSqlCyclopsData
coef.cyclopsFitExtract model coefficients
confint.cyclopsFitConfidence intervals for Cyclops model parameters
convertToCyclopsDataConvert data from two data frames or ffdf objects into a...
convertToCyclopsVarianceConvert to Cyclops Prior Variance
convertToGlmnetLambdaConvert to glmnet regularization parameter
coverageCoverage
createAutoGridCrossValidationControlCreate a Cyclops control object that supports multiple...
createControlCreate a Cyclops control object
createCyclopsDataCreate a Cyclops data object
createParameterizedPriorCreate a Cyclops parameterized prior object
createPriorCreate a Cyclops prior object
cyclopsCyclops: Cyclic coordinate descent for logistic, Poisson and...
finalizeSqlCyclopsDatafinalizeSqlCyclopsData
fitCyclopsModelFit a Cyclops model
fitCyclopsSimulationFit simulated data
getCovariateIdsGet covariate identifiers
getCovariateTypesGet covariate types
getCrossValidationInfoGet cross-validation information from a Cyclops model fit
getCyclopsPredictiveLogLikelihoodCompute predictive log-likelihood from a Cyclops model fit
getHyperParameterGet hyperparameter
getNumberOfCovariatesGet total number of covariates
getNumberOfRowsGet total number of rows
getNumberOfStrataGet number of strata
getNumberOfTypesGet total number of outcome types
getSEsExtract standard errors
getUnivariableCorrelationGet univariable correlation
isInitializedCheck if a Cyclops data object is initialized
isSortedCheck if data are sorted by one or more columns
logLik.cyclopsFitExtract log-likelihood
meanLinearPredictorCalculates xbar*beta
mseMean squared error
MultitypeCreate a multitype outcome object
oxfordOxford self-controlled case series data
plotCyclopsSimulationFitPlot Cyclops simulation model fit
predict.cyclopsFitModel predictions
print.cyclopsDataPrint a Cyclops data object
print.cyclopsFitPrint a Cyclops model fit object
printCyclopsRowIdsPrint row identifiers
printMatrixMarketPrint Cyclops data matrix to file
readCyclopsDataRead Cyclops data from file
reduceApply simple data reductions
simulateCyclopsDataSimulation Cyclops dataset
summary.cyclopsDataCyclops data object summary
survfit.cyclopsFitCalculate baseline hazard function
vcov.cyclopsFitCalculate variance-covariance matrix for a fitted Cyclops...
OHDSI/Cyclops documentation built on Dec. 6, 2017, 5:43 a.m.