# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#' Run the query to create all lookup table.
#'
#' This function will call and run the sql files to create the lookup tables. If parameter sqlFileList is left blank,
#' the default will call LocationTable.sql, CareSiteTable.sql, PersonTable.sql and ProviderTable.sql
#' @param connectionDetails An R object of type\cr\code{connectionDetails} created using the
#' function \code{createConnectionDetails} in the
#' \code{DatabaseConnector} package.
#' @param cdmDatabaseSchema The name of the database schema that contains the OMOP CDM
#' instance. Requires read permissions to this database. On SQL
#' Server, this should specifiy both the database and the schema,
#' so for example 'cdm_instance.dbo'.
#' @param sourceDatabaseSchema The name of the database schema that contains the raw data
#' instance. Requires read permissions to this database. On SQL
#' Server, this should specifiy both the database and the schema,
#' so for example 'raw_instance.dbo'.
#' @param sqlFileList The list of the sql files for the lookup tables containing the sql to run.
#' For example list("LocationTable.sql","PersonTable.sql")
#' @param oracleTempSchema For Oracle only: the name of the database schema where you want
#' all temporary tables to be managed. Requires create/insert
#' permissions to this database.
#'
#' @export
createAllLookupTables <- function (connectionDetails,
cdmDatabaseSchema,
sourceDatabaseSchema,
sqlFileList = NULL,
oracleTempSchema = NULL){
if (is.null(sqlFileList)) {
sqlFileList <- list("LocationTable.sql", "PersonTable.sql", "CareSiteTable.sql", "ProviderTable.sql")
}
numSqlFiles <- length(sqlFileList)
for(i in 1:numSqlFiles){
createLookupTable(connectionDetails,
cdmDatabaseSchema = cdmDatabaseSchema,
sourceDatabaseSchema = sourceDatabaseSchema,
sqlFile = sqlFileList[i],
oracleTempSchema = oracleTempSchema)
}
}
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