Files in OpenMx/OpenMx
Extended Structural Equation Modelling

.Rbuildignore.in
.devmode
.dir-locals.el
.gdbinit
.gitattributes
.gitignore
.travis.yml
CHANGES
CONTRIBUTING
DESCRIPTION
DESCRIPTION.in
Makefile
NAMESPACE
NEWS
NEWS.md
NOTICE
OpenMx.Rproj
R/0ClassUnion.R R/DefinitionVars.R R/DiagMatrix.R R/FullMatrix.R R/IdenMatrix.R R/LowerMatrix.R R/MxAlgebra.R R/MxAlgebraConvert.R R/MxAlgebraFunctions.R R/MxAlgebraObjective.R R/MxAlgebraTransform.R R/MxApply.R R/MxAutoStart.R R/MxAvailableOptimizers.R R/MxBaseNamed.R R/MxBounds.R R/MxCommunication.R R/MxCompare.R R/MxCompute.R R/MxConstraint.R R/MxCycleDetection.R R/MxData.R R/MxDataWLS.R R/MxDeparse.R R/MxDependencies.R R/MxDetectCores.R R/MxDiff.R R/MxErrorHandling.R R/MxEval.R R/MxExpectation.R R/MxExpectationBA81.R R/MxExpectationGREML.R R/MxExpectationHiddenMarkov.R R/MxExpectationLISREL.R R/MxExpectationMixture.R R/MxExpectationNormal.R R/MxExpectationRAM.R R/MxExpectationStateSpace.R R/MxExponential.R R/MxFIMLObjective.R R/MxFactorScores.R R/MxFitFunction.R R/MxFitFunctionAlgebra.R R/MxFitFunctionGREML.R R/MxFitFunctionML.R R/MxFitFunctionMultigroup.R R/MxFitFunctionR.R R/MxFitFunctionRow.R R/MxFitFunctionWLS.R R/MxFlatModel.R R/MxFlatSearchReplace.R R/MxGraph.R R/MxGraphviz.R R/MxInterval.R R/MxLISRELModel.R R/MxLISRELObjective.R R/MxMI.R R/MxMLObjective.R R/MxMMI.R R/MxMatrix.R R/MxMatrixFunctions.R R/MxModel.R R/MxModelDisplay.R R/MxModelFunctions.R R/MxModelParameters.R R/MxMultiModel.R R/MxNamespace.R R/MxObjectiveMetaData.R R/MxOptions.R R/MxPPML.R R/MxPath.R R/MxRAMMetaData.R R/MxRAMModel.R R/MxRAMObjective.R R/MxRAMtoML.R R/MxRObjective.R R/MxRename.R R/MxReservedNames.R R/MxRestore.R R/MxRetro.R R/MxRobustSE.R R/MxRowObjective.R R/MxRun.R R/MxRunHelperFunctions.R R/MxSE.R R/MxSaturatedModel.R R/MxSearchReplace.R R/MxSquareBracket.R R/MxSummary.R R/MxSwift.R R/MxThreshold.R R/MxTryHard.R R/MxTypes.R R/MxUnitTesting.R R/MxUntitled.R
R/MxVersion.R.in
R/OriginalMx.R R/SdiagMatrix.R R/StandMatrix.R R/SymmMatrix.R R/UnitMatrix.R R/ZeroMatrix.R R/cache.R R/omxBrownie.R R/omxConstrainThresholds.R R/omxGetNPSOL.R R/zzz.R README.md
cleanup
configure
configure.win
data/Bollen.txt
data/HS.ability.data.txt
data/HS.fake.data.txt
data/LongitudinalOverdispersedCounts.rda
data/demoOneFactor.csv
data/demoTwoFactor.csv
data/dzfData.txt
data/dzmData.txt
data/dzoData.txt
data/example1.csv
data/example2.csv
data/factorExample1.csv
data/factorScaleExample1.csv
data/factorScaleExample2.csv
data/jointdata.txt
data/latentMultipleRegExample1.csv
data/latentMultipleRegExample2.csv
data/multiData1.txt
data/myAutoregressiveData.txt
data/myFADataRaw.txt
data/myGrowthKnownClassData.txt
data/myGrowthMixtureData.txt
data/myLongitudinalData.txt
data/myRegData.txt
data/myRegDataRaw.txt
data/myTwinData.txt
data/mzfData.txt
data/mzmData.txt
data/nuclear_twin_design_data.txt
data/numHess1.txt
data/numHess2.txt
data/ordinalTwinData.rda
data/twinData.rda
data/twin_NA_dot.txt
demo/00Index
demo/AlternativeApproaches.R demo/BivariateCorrelation.R demo/BivariateHeterogeneity_MatrixRaw.R demo/BivariateHeterogeneity_PathRaw.R demo/BivariateSaturated.R demo/BivariateSaturated_MatrixCov.R demo/BivariateSaturated_MatrixCovCholesky.R demo/BivariateSaturated_MatrixRaw.R demo/BivariateSaturated_MatrixRawCholesky.R demo/BivariateSaturated_PathCov.R demo/BivariateSaturated_PathRaw.R demo/DefinitionMeans_MatrixRaw.R demo/DefinitionMeans_PathRaw.R demo/GrowthMixtureModel_MatrixRaw.R demo/GrowthMixtureModel_PathRaw.R demo/LISRELJointFactorModel.R demo/LatentGrowthCurveModel_MatrixRaw.R demo/LatentGrowthCurveModel_PathRaw.R demo/LatentGrowthCurveModel_PathRaw_ModelRec.R demo/LatentGrowthCurveModel_PathRaw_ObjectAdd.R demo/MatrixAlgebra.R demo/MultipleRegression_MatrixCov.R demo/MultipleRegression_MatrixRaw.R demo/MultipleRegression_PathCov.R demo/MultipleRegression_PathRaw.R demo/MultivariateRegression_MatrixCov.R demo/MultivariateRegression_MatrixRaw.R demo/MultivariateRegression_PathCov.R demo/MultivariateRegression_PathRaw.R demo/OneFactorJoint_MatrixRawRAM.R demo/OneFactorJoint_PathRaw.R demo/OneFactorMatrixDemo.R demo/OneFactorModel_LikelihoodVector.R demo/OneFactorModel_MatrixCov.R demo/OneFactorModel_MatrixRaw.R demo/OneFactorModel_PathCov.R demo/OneFactorModel_PathRaw.R demo/OneFactorOrdinal01_MatrixRaw.R demo/OneFactorOrdinal_MatrixRaw.R demo/OneFactorOrdinal_MatrixRawRAM.R demo/OneFactorOrdinal_PathRaw.R demo/OneFactorPathDemo.R demo/OneLocusLikelihood.R demo/RObjectiveLISRELFactorRegression.R demo/RowObjectiveFIMLBivariateSaturated.R demo/RowObjectiveSimpleExamples.R demo/SimpleCheckpoint.R demo/SimpleRegression_MatrixCov.R demo/SimpleRegression_MatrixRaw.R demo/SimpleRegression_PathCov.R demo/SimpleRegression_PathRaw.R demo/TwoFactorModel_MatrixCov.R demo/TwoFactorModel_MatrixRaw.R demo/TwoFactorModel_PathCov.R demo/TwoFactorModel_PathRaw.R demo/TwoLocusLikelihood.R demo/UnivariateSaturated.R demo/UnivariateSaturated_MatrixCov.R demo/UnivariateSaturated_MatrixRaw.R demo/UnivariateSaturated_PathCov.R demo/UnivariateSaturated_PathRaw.R demo/UnivariateTwinAnalysis.R demo/UnivariateTwinAnalysis_MatrixRaw.R demo/UnivariateTwinAnalysis_PathRaw.R
demo/data/BivariateHeterogeneity1.csv
demo/data/BivariateHeterogeneity2.csv
demo/mxThreshold.R demo/omxConstrainMLThresholds.R
docs/.gitignore
docs/Makefile
docs/extract
docs/make.bat
docs/rcheck
docs/source/.gitignore
docs/source/Advanced_Concepts.rst
docs/source/AlternativeApproaches.rst
docs/source/DefinitionMeans_Matrix.rst
docs/source/DefinitionMeans_Path.rst
docs/source/Examples_Matrix.rst
docs/source/Examples_Path.rst
docs/source/FIML_RowFit.rst
docs/source/FactorAnalysisOrdinal_Matrix.rst
docs/source/FactorAnalysis_Matrix.rst
docs/source/FactorAnalysis_Path.rst
docs/source/File_Checkpointing.rst
docs/source/GeneticEpi_Matrix.rst
docs/source/GeneticEpi_Path.rst
docs/source/GrowthMixtureModel_Matrix.rst
docs/source/GrowthMixtureModel_Path.rst
docs/source/Internals.rst
docs/source/Introduction.rst
docs/source/ItemFactorAnalysis.rst
docs/source/Likelihood_Matrix.rst
docs/source/Multicore_Execution.rst
docs/source/MultipleGroups_Matrix.rst
docs/source/MultipleGroups_Path.rst
docs/source/NewBeginnersGuide.rst
docs/source/Ordinal_Matrix.rst
docs/source/Ordinal_Path.rst
docs/source/Regression_Matrix.rst
docs/source/Regression_Path.rst
docs/source/TimeSeries_Matrix.rst
docs/source/TimeSeries_Path.rst
docs/source/changes.rst
docs/source/conf.py.in
docs/source/csolnp.rst
docs/source/ext/numfig.py
docs/source/graph/BivariateSaturatedModel.png
docs/source/graph/DefinitionMeansModel.png
docs/source/graph/GrowthCurveModel.png
docs/source/graph/HeterogeneityModel.png
docs/source/graph/Histogram_testData.png
docs/source/graph/MultipleRegression.png
docs/source/graph/MultivariateRegression.png
docs/source/graph/OneFactorFiveIndicators.png
docs/source/graph/OneFactorModel.png
docs/source/graph/OneFactorModel5vt.png
docs/source/graph/SimpleRegression.png
docs/source/graph/ThresholdModel.png
docs/source/graph/TwinACEModelDZ.png
docs/source/graph/TwinACEModelMZ.png
docs/source/graph/TwoFactorModel.png
docs/source/graph/UnivariateSaturatedModel.png
docs/source/graph/UnivariateSaturatedModelNoMean.png
docs/source/index.rst
docs/source/openmx_theme/static/openmx_theme.css
docs/source/openmx_theme/theme.conf
docs/substVersion
inst/CITATION.in
inst/models/codeRed/fail_on_re-run_entity_already_exists.R inst/models/codeRed/umxACE_codeRed.R inst/models/enormous/RAM-3Factor-120Indicators-covdata-a.R inst/models/enormous/RAM-3Factor-192Indicators-covdata-a.R inst/models/enormous/RAM-3Factor-192Indicators-rawdata-a.R inst/models/enormous/RAM-3Factor-96Indicators-rawdata-a.R inst/models/enormous/ifa-2pl-se.R inst/models/enormous/ifa-3pl-se.R inst/models/enormous/ifa-4pl-se.R inst/models/enormous/ifa-bifactor-se.R inst/models/enormous/ifa-cyh2011-sim1.R inst/models/enormous/ifa-cyh2011-sim2.R inst/models/enormous/ifa-grm-se.R inst/models/enormous/invert.R inst/models/enormous/lib/stderrlib.R inst/models/enormous/ot2kSim.R inst/models/enormous/rampart.R inst/models/enormous/wu-neale-2012-lgc.R inst/models/failing/All_models_that_seem_fine/ComputeOrderError.R inst/models/failing/CSOLNPmtcars.R inst/models/failing/MultilevelLongFormatFailing.R inst/models/failing/OrdinalLargeSample.R inst/models/failing/PPML_test2L3M.R inst/models/failing/PPML_test2L4M.R inst/models/failing/PPML_test2L4M_MultiLayer.R inst/models/failing/SimpleConfidenceIntervals.R inst/models/failing/check_RAM_paths_dont_overwrite.R inst/models/failing/lacks_mention_of_what_fails/NTF_design.R
inst/models/failing/memprobmodel2.RData
inst/models/failing/mice.R
inst/models/failing/mx-scripts/Autoregressive_MatrixCov.mx
inst/models/failing/mx-scripts/Autoregressive_MatrixRaw.mx
inst/models/failing/mx-scripts/MultipleRegression_MatrixCov.mx
inst/models/failing/mx-scripts/MultipleRegression_MatrixRaw.mx
inst/models/failing/mx-scripts/MultivariateRegression_MatrixCov.mx
inst/models/failing/mx-scripts/MultivariateRegression_MatrixRaw.mx
inst/models/failing/mx-scripts/SimpleRegression_MatrixRaw.mx
inst/models/failing/mx-scripts/TwoFactorModel_MatrixCov.mx
inst/models/failing/mx-scripts/TwoFactorModel_MatrixRaw.mx
inst/models/failing/mx-scripts/myAutoregressiveData.txt
inst/models/failing/mx-scripts/myFAData.txt
inst/models/failing/mx-scripts/myRegData.txt
inst/models/failing/no_longer_able_to_be_run/BivariateSaturated_WLSMatrixCov.R inst/models/failing/no_longer_able_to_be_run/ExtraOrdinalVars.R inst/models/failing/no_longer_able_to_be_run/PPML_100days.R inst/models/failing/no_longer_able_to_be_run/UnivariateTwinAnalysis20090925.R inst/models/failing/no_longer_able_to_be_run/categoricalDefinitionTest.R inst/models/failing/no_longer_able_to_be_run/challengingCI.R inst/models/failing/thresholdsCross.R inst/models/nightly/180209--defvars.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-a.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-b.R inst/models/nightly/3LatentMultiRegWith2LevelModerator-c.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-a.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-b.R inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-c.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-a.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-b.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-c.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-d.R inst/models/nightly/3LatentMultiRegWithContinuousModerator-e.R inst/models/nightly/AnalyticGradientTest.R inst/models/nightly/BootLRT.R inst/models/nightly/BootstrapParallelNightly.R inst/models/nightly/ContinuousTime.R inst/models/nightly/DefaultOptTolerance.R inst/models/nightly/DefinitionIloo.R inst/models/nightly/ETC88.R inst/models/nightly/Extreme_Multiformity_chi.R inst/models/nightly/FactorScores.R inst/models/nightly/GREML_monophenotype_1GRM.R inst/models/nightly/GREML_monophenotype_1GRM_GradDesc.R inst/models/nightly/GrowthMixtureModelRandomStarts.R inst/models/nightly/InvalidComparisonDetection.R inst/models/nightly/JointAutoStrat.R inst/models/nightly/JointMissingTest.R inst/models/nightly/JointWLS.R inst/models/nightly/MIMIC.R inst/models/nightly/ModelIdentification.R inst/models/nightly/ModificationIndexCheck.R inst/models/nightly/MultigroupRobustSE_test.R inst/models/nightly/MultigroupWLS.R inst/models/nightly/MultilevelStateSpaceEx5.R inst/models/nightly/NelderMeadUnitTesting.R inst/models/nightly/OneFactorOrdinal01_MatrixRaw.R inst/models/nightly/OneFactorOrdinal_MatrixRaw.R inst/models/nightly/PPML_100days.R inst/models/nightly/PPML_100days_cov.R inst/models/nightly/PPML_100days_cov_baseline.R inst/models/nightly/PPML_100days_raw.R inst/models/nightly/PPML_100days_raw_baseline.R inst/models/nightly/PPML_test1L2M.R inst/models/nightly/PPML_test1L3M.R inst/models/nightly/ParamBoot2.R inst/models/nightly/Power1.R inst/models/nightly/Power2.R inst/models/nightly/RAM-3Factor-12Indicators-covdata-a.R inst/models/nightly/RAM-3Factor-12Indicators-rawdata-a.R inst/models/nightly/RAM-3Factor-24Indicators-covdata-a-intervals.R inst/models/nightly/RAM-3Factor-24Indicators-covdata-a.R inst/models/nightly/RAM-3Factor-24Indicators-megadata-a.R inst/models/nightly/RAM-3Factor-24Indicators-rawdata-a.R inst/models/nightly/RAM-3Factor-48Indicators-covdata-a.R inst/models/nightly/RAM-3Factor-48Indicators-rawdata-a.R inst/models/nightly/RAM-3Factor-96Indicators-covdata-a.R inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitions.R inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitionsAllFixed.R inst/models/nightly/SkippedRows.R inst/models/nightly/StateSpaceContinuous.R inst/models/nightly/StateSpaceLatentGrowth.R inst/models/nightly/brooke.R
inst/models/nightly/data/ContinuousTime.csv
inst/models/nightly/data/NCSsim.dat
inst/models/nightly/data/cai2009.csv
inst/models/nightly/data/dLL.csv
inst/models/nightly/data/ex9.11.dat
inst/models/nightly/data/ex9.12.dat
inst/models/nightly/data/ex9.1a.dat
inst/models/nightly/data/ex9.23.dat
inst/models/nightly/data/ex9.6.dat
inst/models/nightly/data/faces.xxm.RData
inst/models/nightly/data/fakeSTARTSMissing.csv
inst/models/nightly/data/fakeSTARTSNoMissing.csv
inst/models/nightly/data/g341-19.dat
inst/models/nightly/data/hcfa.xxm.RData
inst/models/nightly/data/lranslp.xxm.RData
inst/models/nightly/data/mlcfa.xxm.RData
inst/models/nightly/data/ms-data.csv
inst/models/nightly/data/reisby.long.xxm.RData
inst/models/nightly/data/reisby.wide.xxm.RData
inst/models/nightly/data/sel.txt
inst/models/nightly/fm-example2-1.R inst/models/nightly/fm-example2-4.R inst/models/nightly/fm-example2-8.R inst/models/nightly/grm_in_fiml.R inst/models/nightly/ifa-2d-mg.R inst/models/nightly/ifa-bifactor.R inst/models/nightly/ifa-cai2009.R inst/models/nightly/ifa-dLL.R inst/models/nightly/ifa-drm-wide.R inst/models/nightly/ifa-fisher-info.R inst/models/nightly/ifa-latent-2d.R inst/models/nightly/ifa-meat-2d.R inst/models/nightly/ifa-meat-2tier.R inst/models/nightly/ifa-ms.R inst/models/nightly/mplus-ex9.1.R inst/models/nightly/mplus-ex9.11.R inst/models/nightly/mplus-ex9.12.R inst/models/nightly/mplus-ex9.23.R inst/models/nightly/mplus-ex9.6.R inst/models/nightly/multilevelLatentRegression2.R inst/models/nightly/multimodelInferenceTest.R inst/models/nightly/mxPowerDetail.R inst/models/nightly/startsTestMissing.R inst/models/nightly/startsTestNoMissing.R inst/models/nightly/thresholdModel1Factor3Variate.R inst/models/nightly/thresholdModel1Factor5Variate.R inst/models/nightly/thresholdModel1Factor5VariateWLS.R inst/models/nightly/thresholdModel1Factor8Variate.R inst/models/nightly/univACErSEM.R inst/models/nightly/wu-neale-2012-lgc.R inst/models/nightly/wu-neale-2012-symmetry.R inst/models/nightly/xxm-cfars.R inst/models/nightly/xxm-faces.R inst/models/nightly/xxm-hcfa.R inst/models/nightly/xxm-lgc.R inst/models/nightly/xxm-mlcfa.R inst/models/passing/ACEDuplicateMatrices.R inst/models/passing/ACELRTCI20160808.R inst/models/passing/Acemix.R inst/models/passing/Acemix2.R inst/models/passing/AlgebraComputePassing.R inst/models/passing/AlgebraDeriv.R inst/models/passing/AlgebraErrorDetection.R inst/models/passing/AlgebraTransformations.R inst/models/passing/AnalyticConstraintJacobians--Eq_and_Ineq.R inst/models/passing/AnalyticConstraintJacobians--LinearObjAndIneq.R inst/models/passing/AnalyticConstraintJacobians--PowellBenchmark.R inst/models/passing/AugmentedGREMLfitfunction.R inst/models/passing/Autoregressive_MatrixCov.R inst/models/passing/Autoregressive_MatrixRaw.R inst/models/passing/Autoregressive_PathCov.R inst/models/passing/Autoregressive_PathRaw.R inst/models/passing/Autoregressive_Transpose_MatrixCov.R inst/models/passing/Autoregressive_Transpose_MatrixRaw.R inst/models/passing/Autoregressive_Tree_Matrix.R inst/models/passing/Autoregressive_Tree_Path.R inst/models/passing/BivRegRawTestSE.R inst/models/passing/BivRegStdTestSE.R inst/models/passing/BogusDefinitionVariables.R inst/models/passing/BootstrapParallel.R inst/models/passing/BukinN2_regressiontest.R inst/models/passing/CIduplicates.R inst/models/passing/CheckpointingEveryIteration.R inst/models/passing/ConfidenceIntervalsDefVar.R inst/models/passing/ConstantSubstitution.R inst/models/passing/ContinuousOnlyWLSTest.R inst/models/passing/DataErrorDetection.R inst/models/passing/DataFrame.R inst/models/passing/DefaultComputePlanTest.R inst/models/passing/DefinitionMeans.R inst/models/passing/DefinitionMeansPath.R inst/models/passing/DefinitionTest2.R inst/models/passing/DogChain.R inst/models/passing/FIMLLikelihoodFrontend.R inst/models/passing/FitMultigroup.R inst/models/passing/FourAAAA.R inst/models/passing/GREML--151123missingDataRegressionTest.R inst/models/passing/GREML--minimal_test_model.R inst/models/passing/GREML--polyphenotype.R inst/models/passing/GREML--testStarterFunctionWithMissingData.R inst/models/passing/GREML_Error_Detection.R inst/models/passing/GREML_intercept_check.R inst/models/passing/GenSA.R inst/models/passing/GeneralizedEstimatingEquations.R inst/models/passing/GraphvizTest.R inst/models/passing/HMM-basic.R inst/models/passing/HMM-defvar.R inst/models/passing/HMM-multigroup.R inst/models/passing/IgnoreFixedConfidenceIntervals.R inst/models/passing/Infeasible.R inst/models/passing/InitializationErrorDetection.R inst/models/passing/IntroSEM-BivariateRaw.R inst/models/passing/IntroSEM-BivariateStd.R inst/models/passing/IntroSEM-MultiRegRaw.R inst/models/passing/IntroSEM-MultiRegStd.R inst/models/passing/IntroSEM-MultivariateRegRaw.R inst/models/passing/IntroSEM-OneFactorCov.R inst/models/passing/IntroSEM-OneFactorRaw.R inst/models/passing/IntroSEM-ThreeFactorScale1Test.R inst/models/passing/IntroSEM-ThreeFactorScale2Test.R inst/models/passing/IntroSEM-ThreeLatentMediationTest1.R inst/models/passing/IntroSEM-ThreeLatentMediationTest2.R inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest1.R inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest2.R inst/models/passing/IntroSEM-UnivariateRaw.R inst/models/passing/IntroSEM-UnivariateStd.R inst/models/passing/InvalidCovarianceMLObjective.R inst/models/passing/JointFIMLRegressionTest.R inst/models/passing/JointFIMLTest.R inst/models/passing/LAD--CheckCode6.R inst/models/passing/LCAlazarsfeld-rewrite.R inst/models/passing/LCAlazarsfeld.R inst/models/passing/LGC_MatrixCov.R inst/models/passing/LGC_PathCov.R inst/models/passing/LISRELExoEndoOnly.R inst/models/passing/LISRELFactorRegressionWithMeansFIMLOrder_MatrixRaw.R inst/models/passing/LISRELFactorRegressionWithMeans_Matrix.R inst/models/passing/LISRELFactorRegressionWithMeans_MatrixRaw.R inst/models/passing/LISRELFactorRegression_Matrix.R inst/models/passing/LisrelTypeCheck.R inst/models/passing/MLErrorConditions.R inst/models/passing/MatrixCreation.R inst/models/passing/MatrixErrorDetection.R inst/models/passing/ModelIndexErrorChecking.R inst/models/passing/ModelRemovePaths.R inst/models/passing/ModelTransformTest.R inst/models/passing/MultiRegStdTestSE.R inst/models/passing/Multilevel-GenData.R inst/models/passing/MultilevelUniRandomSlopeInt.R inst/models/passing/MultipleGroupML.R inst/models/passing/MultipleGroupRAM.R inst/models/passing/MultipleGroupRAMconstraint.R inst/models/passing/MultipleGroupWLS.R inst/models/passing/MultipleRegression_MatrixRawReverse.R inst/models/passing/MultivariateConstraint.R inst/models/passing/MvtGradientTest.R inst/models/passing/MxBoundsTesting.R inst/models/passing/MxEvalDefinitionVar.R inst/models/passing/MxPath.R inst/models/passing/MxTryHardTest.R inst/models/passing/NA-defvar.R inst/models/passing/NameParameterOverlap.R inst/models/passing/NamesReferencesErrorDetection.R inst/models/passing/NelderMead--bothConstraintTypes.R inst/models/passing/NelderMeadErrorTesting.R inst/models/passing/NelderMeadTest--eqConstraint.R inst/models/passing/NelderMeadTest--ineqConstraints.R inst/models/passing/NelderMeadTest.R inst/models/passing/NormalML.R inst/models/passing/OneFactorModel_PathCovReverse.R inst/models/passing/OrdinalPathTest.R inst/models/passing/OrdinalTest.R inst/models/passing/OrdinalTestAlgebra.R inst/models/passing/PearsonSelection.R inst/models/passing/RAM-FIML-defvars.R inst/models/passing/RAMInverseTest.R inst/models/passing/RAMObjectiveErrors.R inst/models/passing/Rampart0.R inst/models/passing/Rampart1.R inst/models/passing/RawCov.R inst/models/passing/RemoveEntriesTest.R inst/models/passing/RenameAndSummary.R inst/models/passing/SanityTest.R inst/models/passing/SaturatedWLSTest.R inst/models/passing/Simple--CheckCode6.R inst/models/passing/SimpleAlgebraCIs.R inst/models/passing/SimpleConfidenceIntervals.R inst/models/passing/SimpleConstraint.R inst/models/passing/SimpleCovariance.R inst/models/passing/SimpleMLAlgebraCIs.R inst/models/passing/SimpleMix.R inst/models/passing/SimpleRObjective.R inst/models/passing/StandardErrorsSimple.R inst/models/passing/StateSpaceAlg.R inst/models/passing/StateSpaceErrorCheck.R inst/models/passing/StateSpaceInputs.R inst/models/passing/StateSpaceMissingData.R inst/models/passing/StateSpaceOsc.R inst/models/passing/SubStateSpaceOsc.R inst/models/passing/Substitutions.R inst/models/passing/SummaryCheck.R inst/models/passing/SummaryFitStatistics.R inst/models/passing/TestRowObjective.R inst/models/passing/TestRowObjectiveExistenceVector.R inst/models/passing/TestUseOptimizer.R inst/models/passing/Tiny_GREML_model_for_full_debug_logging.R inst/models/passing/TwinAnalysisLikelihoodVector.R inst/models/passing/TwinAnalysis_Multivariate_Matrix_Raw.R inst/models/passing/UnivHetModTwinAnalysis_MatrixRawOrdNIQmfFv3.R inst/models/passing/UnivariateRandomInterceptWide.R inst/models/passing/UselessConstraint.R inst/models/passing/WLS+CI.R inst/models/passing/WarmStartTest.R inst/models/passing/ZeroWeightSkip.R inst/models/passing/automaticStarts.R inst/models/passing/bivCorM.R inst/models/passing/bivLognormDemo.R inst/models/passing/checkStandardizedLoadingsEtcetera.R inst/models/passing/check_models_can_be_rerun.R inst/models/passing/cycle.R
inst/models/passing/data/brim.student.csv
inst/models/passing/data/dLL.csv
inst/models/passing/data/datawide.csv
inst/models/passing/data/g341-19.dat
inst/models/passing/data/heck-thomas-2015ch4.rda
inst/models/passing/data/jointdata.txt
inst/models/passing/data/lazarsfeld.ord
inst/models/passing/data/mddndzf.dat
inst/models/passing/data/multiData.csv
inst/models/passing/data/myAutoregressiveData.txt
inst/models/passing/data/myLongitudinalData.txt
inst/models/passing/data/nicsGarbage.ord
inst/models/passing/data/one-factor-reference.dot
inst/models/passing/data/sim1.dz
inst/models/passing/data/sim1.mz
inst/models/passing/defvaralgebra.R inst/models/passing/derivFilter.R inst/models/passing/dmvnorm.R inst/models/passing/evalOnGrid.R inst/models/passing/fm-example2-2.R inst/models/passing/heck-thomas-2015ch4.R inst/models/passing/ifa-allna.R inst/models/passing/ifa-drm-mg.R inst/models/passing/ifa-drm-mg2.R inst/models/passing/ifa-drm1.R inst/models/passing/ifa-grm1.R inst/models/passing/ifa-lmp.R inst/models/passing/ifa-missingdata.R inst/models/passing/joinErrors.R inst/models/passing/jointFactorModelsTest.R inst/models/passing/jointFactorWls.R inst/models/passing/lmer-1.R inst/models/passing/lmer-2.R inst/models/passing/loadMatrix.R inst/models/passing/multilevelLatentRegression.R inst/models/passing/mxLog.R inst/models/passing/mxSE_test.R inst/models/passing/mxSave.R inst/models/passing/mxVersion.R inst/models/passing/mxmanual31-a.R inst/models/passing/mxmanual61-a.R inst/models/passing/mxmanual61-b.R inst/models/passing/nonlinearDefinitionTest.R inst/models/passing/omxMnor.R inst/models/passing/oneLocusLikelihood.R inst/models/passing/rfitfunc.R inst/models/passing/rowAlgTest140708.R inst/models/passing/simplestCI.R inst/models/passing/startingValues.R inst/models/passing/startingValues2.R inst/models/passing/stdizedRAMpaths--UserProvidedCov.R inst/models/passing/tangleF.R inst/models/passing/testAllint.R inst/models/passing/testNumericDerivWithConstraintWarning.R inst/models/passing/test_mxBootstrapStdizeRAMpaths.R inst/models/passing/test_thresh_kept_in_order.R inst/models/passing/thresholdModel1Factor3Variate5000.R inst/models/passing/twoLocusLikelihood.R inst/models/passing/univACEP.R inst/models/passing/univACE_drop_helper.R inst/models/passing/univSatM.R inst/models/passing/vcov.R inst/models/passing/vectorEqualsT.R inst/models/passing/xxm-1.R inst/models/passing/xxm-2.R inst/models/passing/xxm-3.R inst/models/passing/xxm-4.R
inst/mx-scripts/DefinitionMeans.mx
inst/mx-scripts/LCAlazarsfeld.mx
inst/mx-scripts/LCAlazarsfeld.mxo
inst/mx-scripts/acemix.mx
inst/mx-scripts/acemix2.mx
inst/mx-scripts/bivHet.mx
inst/mx-scripts/bivHom.mx
inst/mx-scripts/bivSatR1.mx
inst/mx-scripts/bivSatR1m.mx
inst/mx-scripts/bivSatR2.mx
inst/mx-scripts/mxmanual31-a.mx
inst/mx-scripts/mxmanual61-a.mx
inst/mx-scripts/mxmanual61-b.mx
inst/mx-scripts/one.mx
inst/mx-scripts/one.mxo
inst/mx-scripts/ozbmi.dat
inst/mx-scripts/ozbmi.rec
inst/mx-scripts/poly3dz.mx
inst/mx-scripts/two.mx
inst/mx-scripts/two.mxo
inst/mx-scripts/univACE.mx
inst/mx-scripts/univSatR1.mx
inst/mx-scripts/univSatR1m.mx
inst/mx-scripts/univSatR2.mx
inst/npsol/checksum
inst/npsol/osx/libnpsol.a
inst/npsol/windows/x86/rtools2.10/libnpsol.dll
inst/npsol/windows/x86/rtools2.12/libnpsol.dll
inst/npsol/windows/x86/rtools2.13/libnpsol.dll
inst/npsol/windows/x86/rtools2.9/libnpsol.dll
inst/npsol/windows/x86_64/rtools2.12/libnpsol.dll
inst/tools/OpenMx.supp
inst/tools/OpenMxInstaller.R
inst/tools/docTestGenerator.sh
inst/tools/dummyFunctions.R inst/tools/failTestModels.R
inst/tools/findBuildNum.sh
inst/tools/install-sh
inst/tools/memoryTestModels.R
inst/tools/memoryTestModels.sh
inst/tools/mk-r-libs-user-dir
inst/tools/mxAlgebraParser.py
inst/tools/mxParser.py
inst/tools/parallelTestModels.R
inst/tools/regressionTesting.sh
inst/tools/rprofTestModels.R
inst/tools/sphinxToR.py
inst/tools/testDocs.R inst/tools/testModels.R inst/tools/testNightlyPPML.R
inst/tools/updateCopyright.sh
man/Bollen_data.Rd man/HS.ability.data.Rd man/LongitudinalOverdispersedCounts.Rd man/MxAlgebra-class.Rd man/MxBounds-class.Rd man/MxCI-class.Rd man/MxConstraint-class.Rd man/MxData-class.Rd man/MxExpectationGREML-class.Rd man/MxFitFunctionGREML-class.Rd man/MxMMI.Rd man/MxMatrix-class.Rd man/MxModel-class.Rd man/Named-entity.Rd
man/README
man/as.statusCode.Rd man/cvectorize.Rd man/demoOneFactor_data.Rd man/demoTwoFactor_data.Rd man/diag2vec.Rd man/dzfData.Rd man/dzmData.Rd man/dzoData.Rd man/eigenvec.Rd man/example1_data.Rd man/example2_data.Rd man/factorExample1_data.Rd man/factorScaleExample1_data.Rd man/factorScaleExample2_data.Rd man/imxGetNumThreads.Rd man/imxReportProgress.Rd man/imxWlsChiSquare.Rd man/imxWlsStandardErrors.Rd man/jointdata_data.Rd man/latentMultipleRegExample1_data.Rd man/latentMultipleRegExample2_data.Rd man/multiData1_data.Rd man/mxAlgebra.Rd man/mxAlgebraObjective.Rd man/mxBootstrap.Rd man/mxBootstrapEval.Rd man/mxBootstrapStdizeRAMpaths.Rd man/mxBounds.Rd man/mxCI.Rd man/mxCheckIdentification.Rd man/mxCompare.Rd man/mxComputeBootstrap.Rd man/mxComputeCheckpoint.Rd man/mxComputeJacobian.Rd man/mxComputeLoadMatrix.Rd man/mxComputeNelderMead.Rd man/mxComputeSimAnnealing.Rd man/mxConstraint.Rd man/mxData.Rd man/mxDataWLS.Rd man/mxEval.Rd man/mxEvaluateOnGrid.Rd man/mxExpectationGREML.Rd man/mxExpectationHiddenMarkov.Rd man/mxExpectationLISREL.Rd man/mxExpectationMixture.Rd man/mxExpectationNormal.Rd man/mxExpectationRAM.Rd man/mxExpectationStateSpace.Rd man/mxExpectationStateSpaceContinuousTime.Rd man/mxFIMLObjective.Rd man/mxFactor.Rd man/mxFactorScores.Rd man/mxFitFunctionAlgebra.Rd man/mxFitFunctionGREML.Rd man/mxFitFunctionML.Rd man/mxFitFunctionMultigroup.Rd man/mxFitFunctionR.Rd man/mxFitFunctionRow.Rd man/mxFitFunctionWLS.Rd man/mxGREMLDataHandler.Rd man/mxGenerateData.Rd man/mxGetExpected.Rd man/mxKalmanScores.Rd man/mxLISRELObjective.Rd man/mxMI.Rd man/mxMLObjective.Rd man/mxMatrix.Rd man/mxModel.Rd man/mxOption.Rd man/mxParametricBootstrap.Rd man/mxPath.Rd man/mxPearsonSelCov.Rd man/mxPower.Rd man/mxRAMObjective.Rd man/mxRObjective.Rd man/mxRename.Rd man/mxRestore.Rd man/mxRowObjective.Rd man/mxRun.Rd man/mxSave.Rd man/mxStandardizeRAMpaths.Rd man/mxThreshold.Rd man/mxTryHard.Rd man/mxTypes.Rd man/mxVersion.Rd man/myAutoregressiveData_data.Rd man/myFADataRaw.Rd man/myGrowthKnownClassData_data.Rd man/myGrowthMixtureData_data.Rd man/myLongitudinalData_data.Rd man/myRegDataRaw_data.Rd man/myRegData_data.Rd man/myTwinData_data.Rd man/mzfData.Rd man/mzmData.Rd man/nuclear_twin_design_data.Rd man/numHess1.Rd man/numHess2.Rd man/omxAllInt.Rd man/omxApply.Rd man/omxAssignFirstParameters.Rd man/omxBrownie.Rd man/omxCheckEquals.Rd man/omxCheckIdentical.Rd man/omxCheckSetEquals.Rd man/omxCheckTrue.Rd man/omxCheckWithinPercentError.Rd man/omxDefaultComputePlan.Rd man/omxGetBootstrapReplications.Rd man/omxGetParameters.Rd man/omxGraphviz.Rd man/omxLapply.Rd man/omxLocateParameters.Rd man/omxLogical.Rd man/omxMatrixOperations.Rd man/omxMnor.Rd man/omxModelDeleteData.Rd man/omxParallelCI.Rd man/omxRMSEA.Rd man/omxSapply.Rd man/omxSaturatedModel.Rd man/omxSelectRowsAndCols.Rd man/omxSetParameters.Rd man/omxSymbolTable.Rd man/ordinalTwinData.Rd man/rvectorize.Rd man/summary.MxModel.Rd man/tr.Rd man/twinData.Rd man/twin_NA_dot_data.Rd man/vec2diag.Rd man/vech.Rd man/vech2full.Rd man/vechs.Rd man/vechs2full.Rd
middle/.gitignore
middle/IntroSEM-UnivariateRaw.R middle/README.md
middle/coord.js
middle/opt.R
middle/package.json
revdep/testDrive
src/AlgebraFunctions.h
src/Compute.cpp
src/Compute.h
src/ComputeGD.cpp
src/ComputeGD.h
src/ComputeNM.cpp
src/ComputeNM.h
src/ComputeNR.cpp
src/ComputeSD.cpp
src/ComputeSD.h
src/Connectedness.h
src/EnableWarnings.h
src/FellnerFitFunction.cpp
src/Makevars.in
src/Makevars.win.in
src/MarkovExpectation.cpp
src/MarkovFF.cpp
src/RAMInternal.h
src/algebraOp.h
src/asa.c
src/asa.h
src/asa_usr_asa.h
src/autodep
src/ba81quad.cpp
src/ba81quad.h
src/dmvnorm.cpp
src/dmvnorm.h
src/finiteDifferences.h
src/fitMultigroup.cpp
src/fitMultigroup.h
src/general.c
src/glue.cpp
src/glue.h
src/matrix.cpp
src/matrix.h
src/merge.cpp
src/merge.h
src/minicsv.h
src/multi_normal_sufficient.hpp
src/mvbvn.f
src/nanotimer.cpp
src/nanotimer_gettime.h
src/nanotimer_macosx.h
src/nanotimer_rtposix.h
src/nanotimer_windows.h
src/nlopt-internal.h
src/nlopt-util.h
src/nlopt.h
src/nr.h
src/omxAlgebra.cpp
src/omxAlgebra.h
src/omxAlgebraFitFunction.cpp
src/omxBVN.h
src/omxBuffer.h
src/omxCsolnp.h
src/omxData.cpp
src/omxData.h
src/omxDefines.h
src/omxExpectation.cpp
src/omxExpectation.h
src/omxExpectationBA81.cpp
src/omxExpectationBA81.h
src/omxExportBackendState.cpp
src/omxExportBackendState.h
src/omxFIMLFitFunction.cpp
src/omxFIMLFitFunction.h
src/omxFitFunction.cpp
src/omxFitFunction.h
src/omxFitFunctionBA81.cpp
src/omxGREMLExpectation.cpp
src/omxGREMLExpectation.h
src/omxGREMLfitfunction.cpp
src/omxHessianCalculation.cpp
src/omxImportFrontendState.cpp
src/omxImportFrontendState.h
src/omxLISRELExpectation.cpp
src/omxLISRELExpectation.h
src/omxMLFitFunction.cpp
src/omxMatrix.cpp
src/omxMatrix.h
src/omxNLopt.cpp
src/omxNLopt.h
src/omxNPSOLSpecific.cpp
src/omxNPSOLSpecific.h
src/omxNormalExpectation.cpp
src/omxRAMExpectation.cpp
src/omxRFitFunction.cpp
src/omxRFitFunction.h
src/omxRowFitFunction.cpp
src/omxRowFitFunction.h
src/omxSadmvnWrapper.h
src/omxState.cpp
src/omxState.h
src/omxStateSpaceExpectation.cpp
src/omxWLSFitFunction.cpp
src/optimize.c
src/options.c
src/sadmvn.f
src/slsqp.c
src/slsqp.h
src/ssMLFit.cpp
src/stop.c
src/subnp.cpp
util/buildbot/README.txt
util/buildbot/master.cfg
util/buildbot/start-buildslaves
util/buildbot/test-openmx1
util/buildbot/test-openmx2
util/buildbot/test-openmx3
util/buildbot/uva.txt
util/cbor
util/checkTestCase
util/copySymbolTable.R
util/coverage
util/docker/dev-clang/Dockerfile
util/docker/dev-gcc/Dockerfile
util/docker/latest/Dockerfile
util/docker/master/Dockerfile
util/docker/release/Dockerfile
util/gcc.conf
util/gcc5.conf
util/gcc6.conf
util/gcc7.conf
util/gdb-where
util/genDocker
util/genSymbolTableHeader.R util/genSymbolTableSource.R
util/libtastic.py
util/omxSymbolTable.tab
util/prep
util/rhub-osx.R
util/rox
util/travis/deploy
util/travis/deploy_rsa.enc
util/travis/install-linux
util/travis/install-osx
util/travis/nightly-success
util/travis/script
util/update-dependencies.R
util/update-home-url
OpenMx/OpenMx documentation built on Nov. 16, 2018, 6:21 p.m.