Oshlack/AllSorts: Classification of RNA-seq data from ALL samples

Takes raw count data (counts per gene) from RNA-Seq data and classifies sample based on a random forest machine learning algorithm. Outputs the class of all input samples and the probability for the sample being classified into one of the following categories:Phlike, ETV, ERG, Other.

Getting started

Package details

AuthorAnthony Hawkins
Bioconductor views Classification Software
MaintainerAnthony Hawkins <[email protected]>, Breon Schmidt <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Oshlack/AllSorts documentation built on May 7, 2019, 9:25 p.m.