Man pages for Oshlack/splatter
Simple Simulation of Single-cell RNA Sequencing Data

addFeatureStatsAdd feature statistics
addGeneLengthsAdd gene lengths
BASiCSEstimateEstimate BASiCS simulation parameters
BASiCSParamsThe BASiCSParams class
BASiCSSimulateBASiCS simulation
bridgeBrownian bridge
compareSCEsCompare SingleCellExperiment objects
diffSCEsDiff SingleCellExperiment objects
expandParamsExpand parameters
getLNormFactorsGet log-normal factors
getParamGet a parameter
getParamsGet parameters
getPathOrderGet path order
listSimsList simulations
logisticLogistic function
lun2EstimateEstimate Lun2 simulation parameters
Lun2ParamsThe Lun2Params class
lun2SimulateLun2 simulation
lunEstimateEstimate Lun simulation parameters
LunParamsThe LunParams class
lunSimulateLun simulation
makeCompPanelMake comparison panel
makeDiffPanelMake difference panel
makeOverallPanelMake overall panel
mfaEstimateEstimate mfa simulation parameters
MFAParamsThe MFAParams class
mfaSimulateMFA simulation
newParamsNew Params
ParamsThe Params virtual class
phenoEstimateEstimate PhenoPath simulation parameters
PhenoParamsThe PhenoParams class
phenoSimulatePhenoPath simulation
rbindMatchedBind rows (matched)
scDDEstimateEstimate scDD simulation parameters
SCDDParamsThe SCDDParams class
scDDSimulatescDD simulation
setParamSet a parameter
setParamsSet parameters
setParamsUncheckedSet parameters UNCHECKED
setParamUncheckedSet a parameter UNCHECKED
showPPShow pretty print
simpleEstimateEstimate simple simulation parameters
SimpleParamsThe SimpleParams class
simpleSimulateSimple simulation
splatEstBCVEstimate Splat Biological Coefficient of Variation parameters
splatEstDropoutEstimate Splat dropout parameters
splatEstimateEstimate Splat simulation parameters
splatEstLibEstimate Splat library size parameters
splatEstMeanEstimate Splat mean parameters
splatEstOutlierEstimate Splat expression outlier parameters
SplatParamsThe SplatParams class
splatSimBatchCellMeansSimulate batch means
splatSimBatchEffectsSimulate batch effects
splatSimBCVMeansSimulate BCV means
splatSimCellMeansSimulate cell means
splatSimDESimulate group differential expression
splatSimDropoutSimulate dropout
splatSimGeneMeansSimulate gene means
splatSimLibSizesSimulate library sizes
splatSimTrueCountsSimulate true counts
splatSimulateSplat simulation
splattersplatter.
summariseDiffSummarise diffSCESs
winsorizeWinsorize vector
zinbEstimateEstimate ZINB-WaVE simulation parameters
ZINBParamsThe ZINBParams class
zinbSimulateZINB-WaVE simulation
Oshlack/splatter documentation built on Oct. 18, 2017, 7:09 p.m.