library(testthat)
credential <- retrieve_credential_testing(212L)
project <- redcap_project$new(redcap_uri=credential$redcap_uri, token=credential$token)
update_expectation <- FALSE
test_that("smoke", {
testthat::skip_on_cran()
#Static method w/ default batch size
returned_object <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
verbose = FALSE
)
# #Static method w/ tiny batch size
# expect_message(
# returned_object <- redcap_read(redcap_uri=credential$redcap_uri, token=credential$token, batch_size=2)
# )
#Instance method w/ default batch size
returned_object <- project$read(verbose = FALSE)
expect_type(returned_object, "list")
#Instance method w/ tiny batch size
returned_object <- project$read(batch_size = 2, verbose = FALSE)
expect_type(returned_object, "list")
})
test_that("so-example-data-frame-retrieval", {
path_expected <- "test-data/project-longitudinal/expected/so-example-data-frame-retrieval.R"
actual <- tibble::tibble(a=1:5, b=6:10)
if (update_expectation) save_expected(actual, path_expected)
expected_data_frame <- retrieve_expected(path_expected)
expect_equal(actual, expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE)
expect_s3_class(actual, "tbl")
})
test_that("default", {
testthat::skip_on_cran()
path_expected <- "test-data/project-longitudinal/expected/default.R"
expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\."
###########################
## Default Batch size
returned_object1 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
verbose = FALSE
)
if (update_expectation) save_expected(returned_object1$data, path_expected)
expected_data_frame <- retrieve_expected(path_expected)
expect_equal(returned_object1$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object1$data)
expect_true(returned_object1$success)
expect_match(returned_object1$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object1$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object1$fields_collapsed=="", "A subset of fields was not requested.")
expect_true(nchar(returned_object1$filter_logic)==0L, "A filter was not specified.")
expect_match(returned_object1$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object1$data, "tbl")
###########################
## Tiny Batch size
returned_object2 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
batch_size = 8,
verbose = FALSE
)
expect_equal(returned_object2$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object2$data)
expect_true(returned_object2$success)
expect_match(returned_object2$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object2$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object2$fields_collapsed=="", "A subset of fields was not requested.")
expect_true(nchar(returned_object2$filter_logic)==0L, "A filter was not specified.")
expect_match(returned_object2$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object2$data, "tbl")
})
test_that("filter-numeric", {
testthat::skip_on_cran()
path_expected <- "test-data/project-longitudinal/expected/filter-numeric.R"
expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\."
filter <- "[bmi] > 25"
###########################
## Default Batch size
returned_object1 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
filter_logic = filter,
verbose = FALSE
)
if (update_expectation) save_expected(returned_object1$data, path_expected)
expected_data_frame <- retrieve_expected(path_expected)
expect_equal(returned_object1$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object1$data)
expect_true(returned_object1$success)
expect_match(returned_object1$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object1$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object1$fields_collapsed=="", "A subset of fields was not requested.")
expect_equal(returned_object1$filter_logic, filter)
expect_match(returned_object1$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object1$data, "tbl")
###########################
## Tiny Batch size
returned_object2 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
batch_size = 8,
filter_logic = filter,
verbose = FALSE
)
expect_equal(returned_object2$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object2$data)
expect_true(returned_object2$success)
expect_match(returned_object2$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object2$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object2$fields_collapsed=="", "A subset of fields was not requested.")
expect_equal(returned_object1$filter_logic, filter)
expect_match(returned_object2$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object2$data, "tbl")
})
test_that("filter-character", {
testthat::skip_on_cran()
path_expected <- "test-data/project-longitudinal/expected/filter-character.R"
expected_outcome_message <- "\\d+ records and \\d+ columns were read from REDCap in \\d+(\\.\\d+\\W|\\W)seconds\\."
filter <- "[email] = 'zlehnox@gmail.com'"
###########################
## Default Batch size
returned_object1 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
filter_logic = filter,
verbose = FALSE
)
if (update_expectation) save_expected(returned_object1$data, path_expected)
expected_data_frame <- retrieve_expected(path_expected)
expect_equal(returned_object1$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object1$data)
expect_true(returned_object1$success)
expect_match(returned_object1$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object1$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object1$fields_collapsed=="", "A subset of fields was not requested.")
expect_equal(returned_object1$filter_logic, filter)
expect_match(returned_object1$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object1$data, "tbl")
###########################
## Tiny Batch size
returned_object2 <-
redcap_read(
redcap_uri = credential$redcap_uri,
token = credential$token,
batch_size = 8,
filter_logic = filter,
verbose = FALSE
)
expect_equal(returned_object2$data, expected=expected_data_frame, label="The returned data.frame should be correct", ignore_attr = TRUE) # dput(returned_object2$data)
expect_true(returned_object2$success)
expect_match(returned_object2$status_codes, regexp="200", perl=TRUE)
expect_true(returned_object2$records_collapsed=="", "A subset of records was not requested.")
expect_true(returned_object2$fields_collapsed=="", "A subset of fields was not requested.")
expect_equal(returned_object2$filter_logic, filter)
expect_match(returned_object2$outcome_messages, regexp=expected_outcome_message, perl=TRUE)
expect_s3_class(returned_object2$data, "tbl")
})
rm(credential, project, update_expectation)
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