Files in OutbreakResources/incidence
Compute, Handle, Plot and Model Incidence of Dated Events

.Rbuildignore
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md R/bootstrap.R R/check_boundaries.R R/check_dates.R R/check_dots.R R/check_groups.R R/check_interval.R R/check_timespan.R R/check_week.R R/conversion.R R/cumulate.R R/dim.R R/estimate_peak.R R/extract_info.R R/find_peak.R R/fit.R R/fit_optim_split.R R/get_counts.R R/get_dates.R R/get_fit.R R/get_info.R R/get_interval.R R/get_n.R R/get_timespan.R R/group_names.R R/incidence.R R/internals.R R/make_breaks.R R/make_incidence.R R/palettes.R R/plot.R R/pool.R R/print.R R/subset.R R/trim_observations.R R/valid_interval.R R/zzz.R README.Rmd README.md
_pkgdown.yml
appveyor.yml
artwork/banner.png
artwork/logo/logo.png
artwork/logo/logo.svg
artwork/workflow/workflow.svg
artwork/workflow/workflow_script.R bug_reports/issue_34.R
codecov.yml
cran-comments.md
demo/00Index
demo/incidence-demo.R
docs/CONDUCT.html
docs/LICENSE-text.html
docs/articles/conversions.html
docs/articles/conversions_files/figure-html/example-1.png
docs/articles/conversions_files/figure-html/iso-1.png
docs/articles/conversions_files/figure-html/long-1.png
docs/articles/conversions_files/figure-html/unnamed-chunk-3-1.png
docs/articles/conversions_files/figure-html/unnamed-chunk-3-2.png
docs/articles/conversions_files/figure-html/unnamed-chunk-4-1.png
docs/articles/customize_plot.html
docs/articles/customize_plot_files/figure-html/EPIET1-1.png
docs/articles/customize_plot_files/figure-html/colors1-1.png
docs/articles/customize_plot_files/figure-html/colors2-1.png
docs/articles/customize_plot_files/figure-html/colors3-1.png
docs/articles/customize_plot_files/figure-html/default-1.png
docs/articles/customize_plot_files/figure-html/default-2.png
docs/articles/customize_plot_files/figure-html/default-3.png
docs/articles/customize_plot_files/figure-html/grid1-1.png
docs/articles/customize_plot_files/figure-html/grid2-1.png
docs/articles/customize_plot_files/figure-html/incidence_pal1-1.png
docs/articles/customize_plot_files/figure-html/legend1-1.png
docs/articles/customize_plot_files/figure-html/pal2-1.png
docs/articles/customize_plot_files/figure-html/palettes-1.png
docs/articles/customize_plot_files/figure-html/palettes-2.png
docs/articles/customize_plot_files/figure-html/scales1-1.png
docs/articles/customize_plot_files/figure-html/scales2-1.png
docs/articles/incidence_class.html
docs/articles/incidence_class_files/figure-html/i-1.png
docs/articles/incidence_class_files/figure-html/sex-1.png
docs/articles/incidence_fit_class.html
docs/articles/incidence_fit_class_files/figure-html/combine-1.png
docs/articles/incidence_fit_class_files/figure-html/fit_dates-1.png
docs/articles/incidence_fit_class_files/figure-html/fit_gender-1.png
docs/articles/incidence_fit_class_files/figure-html/incidence_by_gender-1.png
docs/articles/incidence_fit_class_files/figure-html/incidence_fit_list-1.png
docs/articles/incidence_fit_class_files/figure-html/list_stuff-1.png
docs/articles/index.html
docs/articles/overview.html
docs/articles/overview_files/figure-html/fit.both-1.png
docs/articles/overview_files/figure-html/fit1-1.png
docs/articles/overview_files/figure-html/gender-1.png
docs/articles/overview_files/figure-html/groupsub-1.png
docs/articles/overview_files/figure-html/hosp-1.png
docs/articles/overview_files/figure-html/i7outcome-1.png
docs/articles/overview_files/figure-html/incid1-1.png
docs/articles/overview_files/figure-html/interv-1.png
docs/articles/overview_files/figure-html/interv-2.png
docs/articles/overview_files/figure-html/interv-3.png
docs/articles/overview_files/figure-html/middle-1.png
docs/articles/overview_files/figure-html/optim-1.png
docs/articles/overview_files/figure-html/optim-2.png
docs/articles/overview_files/figure-html/optim2-1.png
docs/articles/overview_files/figure-html/optim2-2.png
docs/articles/overview_files/figure-html/stripes-1.png
docs/articles/overview_files/figure-html/tail-1.png
docs/articles/overview_files/figure-html/unnamed-chunk-2-1.png
docs/articles/overview_files/figure-html/unnamed-chunk-3-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/figs/fit-plot-1-1.png
docs/figs/fit-plot-2-1.png
docs/figs/fit1-1.png
docs/figs/gender-1.png
docs/figs/i7outcome-1.png
docs/figs/i7outcome_cum-1.png
docs/figs/incid1-1.png
docs/figs/optim-1.png
docs/figs/optim-2.png
docs/figs/pipe-fit-1.png
docs/figs/start-1.png
docs/figs/tail-1.png
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/accessors.html
docs/reference/bootstrap-1.png
docs/reference/bootstrap-2.png
docs/reference/bootstrap.html
docs/reference/conversions-1.png
docs/reference/conversions.html
docs/reference/cumulate-1.png
docs/reference/cumulate-2.png
docs/reference/cumulate.html
docs/reference/estimate_peak-1.png
docs/reference/estimate_peak-2.png
docs/reference/estimate_peak-3.png
docs/reference/estimate_peak-4.png
docs/reference/estimate_peak.html
docs/reference/find_peak-1.png
docs/reference/find_peak-2.png
docs/reference/find_peak-3.png
docs/reference/find_peak.html
docs/reference/fit-1.png
docs/reference/fit-2.png
docs/reference/fit-3.png
docs/reference/fit-4.png
docs/reference/fit-5.png
docs/reference/fit-6.png
docs/reference/fit-7.png
docs/reference/fit-8.png
docs/reference/fit-9.png
docs/reference/fit.html
docs/reference/get_counts.html
docs/reference/get_dates.html
docs/reference/get_fit.html
docs/reference/group_names.html
docs/reference/incidence-1.png
docs/reference/incidence-2.png
docs/reference/incidence-3.png
docs/reference/incidence-4.png
docs/reference/incidence.html
docs/reference/index.html
docs/reference/palettes-1.png
docs/reference/palettes-2.png
docs/reference/palettes-3.png
docs/reference/palettes-4.png
docs/reference/palettes.html
docs/reference/plot.incidence-1.png
docs/reference/plot.incidence-10.png
docs/reference/plot.incidence-2.png
docs/reference/plot.incidence-3.png
docs/reference/plot.incidence-4.png
docs/reference/plot.incidence-5.png
docs/reference/plot.incidence-6.png
docs/reference/plot.incidence-7.png
docs/reference/plot.incidence-8.png
docs/reference/plot.incidence-9.png
docs/reference/plot.incidence.html
docs/reference/pool.html
docs/reference/subset-1.png
docs/reference/subset-2.png
docs/reference/subset.html
figs/fit-plot-1-1.png
figs/fit-plot-2-1.png
figs/fit1-1.png
figs/gender-1.png
figs/i7outcome-1.png
figs/i7outcome_cum-1.png
figs/incid1-1.png
figs/optim-1.png
figs/optim-2.png
figs/pipe-fit-1.png
figs/start-1.png
figs/tail-1.png
incidence.Rproj
inst/WORDLIST
man/accessors.Rd man/bootstrap.Rd man/conversions.Rd man/cumulate.Rd man/estimate_peak.Rd man/find_peak.Rd man/fit.Rd man/get_counts.Rd man/get_dates.Rd man/get_fit.Rd man/group_names.Rd man/incidence.Rd man/palettes.Rd man/plot.incidence.Rd man/pool.Rd man/subset.Rd misc/plotly-expl.R
tests/figs/deps.txt
tests/figs/test-plotting/epiquares-single-plot.svg
tests/figs/test-plotting/grouped-incidence-fit.svg
tests/figs/test-plotting/grouped-incidence-plot-cumulative.svg
tests/figs/test-plotting/grouped-incidence-plot-with-color-palette.svg
tests/figs/test-plotting/grouped-incidence-plot-with-fit.svg
tests/figs/test-plotting/grouped-incidence-plot-with-one-group.svg
tests/figs/test-plotting/grouped-incidence-plot-with-specified-color.svg
tests/figs/test-plotting/grouped-incidence-plot.svg
tests/figs/test-plotting/incidence-fit-list-plot-with-split.svg
tests/figs/test-plotting/incidence-fit-plot-with-split.svg
tests/figs/test-plotting/incidence-fit.svg
tests/figs/test-plotting/incidence-plot-by-month.svg
tests/figs/test-plotting/incidence-plot-by-quarter.svg
tests/figs/test-plotting/incidence-plot-from-posixct-data.svg
tests/figs/test-plotting/incidence-plot-with-default-interval-cumulative.svg
tests/figs/test-plotting/incidence-plot-with-default-interval.svg
tests/figs/test-plotting/incidence-plot-with-interval-of-14-days.svg
tests/figs/test-plotting/incidence-plot-with-interval-of-3-days-fit-and-specified-color.svg
tests/figs/test-plotting/incidence-plot-with-isoweek-labels.svg
tests/figs/test-plotting/incidence-plot-with-specified-color-and-alpha.svg
tests/figs/test-plotting/incidence-plot-with-two-fitting-models.svg
tests/figs/test-plotting/incidence-plot-without-isoweek-labels.svg
tests/figs/test-plotting/split-optimum-plot-pooled.svg
tests/figs/test-plotting/split-optimum-plot.svg
tests/testthat.R
tests/testthat/rds/df.rds
tests/testthat/rds/df2.rds
tests/testthat/rds/df3.rds
tests/testthat/rds/df5.rds
tests/testthat/rds/df6.rds
tests/testthat/rds/dfl.rds
tests/testthat/rds/fit.i.rds
tests/testthat/rds/fit.i.sex.rds
tests/testthat/rds/incidence.res1.rds
tests/testthat/rds/incidence.res2.rds
tests/testthat/rds/incidence.res3.rds
tests/testthat/rds/incidence.res4.rds
tests/testthat/rds/incidence.res5.rds
tests/testthat/rds/incidence.res6.rds
tests/testthat/rds/incidence.res7.rds
tests/testthat/rds/incidence.res8.rds
tests/testthat/rds/o.fit.i.rds
tests/testthat/rds/o.fit.i.sex.rds
tests/testthat/rds/print.fit.i.rds
tests/testthat/rds/print.fit.sex.rds
tests/testthat/rds/print1.rds
tests/testthat/rds/print2.rds
tests/testthat/rds/print3.rds
tests/testthat/rds/ref_date_breaks_iso.rds
tests/testthat/rds/res.g.1.rds
tests/testthat/rds/res.g.2.rds
tests/testthat/rds/res.g.3.rds
tests/testthat/rds/x.sub1.rds
tests/testthat/rds/x.sub2.rds
tests/testthat/rds/x.sub3.rds
tests/testthat/rds/x.sub4.rds
tests/testthat/rds/x.sub5.rds
tests/testthat/rds/y.sub1.rds
tests/testthat/test-accessors.R tests/testthat/test-bootstrap.R tests/testthat/test-conversions.R tests/testthat/test-cumulate.R tests/testthat/test-fit.R tests/testthat/test-incidence.R tests/testthat/test-non-exported.R tests/testthat/test-palettes.R tests/testthat/test-plot.R tests/testthat/test-pool.R tests/testthat/test-subset.R vignettes/conversions.Rmd vignettes/customize_plot.Rmd
vignettes/figs-class/i-1.png
vignettes/figs-class/sex-1.png
vignettes/figs-conversion/example-1.png
vignettes/figs-conversion/iso-1.png
vignettes/figs-conversion/long-1.png
vignettes/figs-conversion/unnamed-chunk-3-1.png
vignettes/figs-conversion/unnamed-chunk-3-2.png
vignettes/figs-conversion/unnamed-chunk-4-1.png
vignettes/figs-custom/colors1-1.png
vignettes/figs-custom/colors2-1.png
vignettes/figs-custom/colors3-1.png
vignettes/figs-custom/default-1.png
vignettes/figs-custom/default-2.png
vignettes/figs-custom/default-3.png
vignettes/figs-custom/grid1-1.png
vignettes/figs-custom/grid2-1.png
vignettes/figs-custom/incidence_pal1-1.png
vignettes/figs-custom/legend1-1.png
vignettes/figs-custom/pal1-1.png
vignettes/figs-custom/pal2-1.png
vignettes/figs-custom/palettes-1.png
vignettes/figs-custom/palettes-2.png
vignettes/figs-custom/scales1-1.png
vignettes/figs-custom/scales2-1.png
vignettes/figs-fit/combine-1.png
vignettes/figs-fit/fit_dates-1.png
vignettes/figs-fit/fit_gender-1.png
vignettes/figs-fit/incidence_by_gender-1.png
vignettes/figs-fit/incidence_fit_list-1.png
vignettes/figs-fit/list_stuff-1.png
vignettes/figs-overview/fit.both-1.png
vignettes/figs-overview/fit1-1.png
vignettes/figs-overview/gender-1.png
vignettes/figs-overview/groupsub-1.png
vignettes/figs-overview/hosp-1.png
vignettes/figs-overview/i7outcome-1.png
vignettes/figs-overview/incid1-1.png
vignettes/figs-overview/interv-1.png
vignettes/figs-overview/interv-2.png
vignettes/figs-overview/interv-3.png
vignettes/figs-overview/middle-1.png
vignettes/figs-overview/optim-1.png
vignettes/figs-overview/optim-2.png
vignettes/figs-overview/optim2-1.png
vignettes/figs-overview/optim2-2.png
vignettes/figs-overview/stripes-1.png
vignettes/figs-overview/tail-1.png
vignettes/figs-overview/unnamed-chunk-2-1.png
vignettes/figs-overview/unnamed-chunk-3-1.png
vignettes/incidence_class.Rmd vignettes/incidence_fit_class.Rmd vignettes/overview.Rmd
OutbreakResources/incidence documentation built on Dec. 8, 2018, 12:17 a.m.