Files in Oyserman/ctr
Congruent Transcriptional Response

.Rbuildignore
.gitignore
CTR_workflow.pdf
CTR_workflow.png
DESCRIPTION
NAMESPACE
Other_Modules.txt
R/Background_Distribution_Modules.R R/Calc_Average_Attribute_Completeness.R
R/Calc_JPE_distance_no_Clustering
R/Calc_Jaccard.R R/Calc_Norm_Euc.R R/Calc_Pairwise_KOs_Dist.R R/Calc_completenes_table.R R/ClusterPrune.R R/Cor_Matrix.R R/Create_Rank_Columns.R R/Definitions.R R/Examples.R R/Generate_Random_Module.R R/Individual_KOs_Background.R R/Jaccard_Distance_Function.R R/NRED_Distance_Function.R R/Normalize.R R/P_Distance_Function.R R/P_NRED_Distance_Function.R R/Pairwise_Genome_Individual_KOs_Background.R R/Plot_Module_Attributes.R R/Presence_Absence_Matrix.R R/RcppExports.R R/Rcyto.R R/Wrapper.R R/apriori.R R/array_fig.R R/ave_Z_score_Func.R R/calc_Z_scores.R R/cluster_func_lists.R R/fill_ass_matrix.R R/make_module_lists.R R/plot_individual_bd.R R/which_rows_with_no_sd.R README.md
ctr.Rproj
man/Calc_Ave_Attribute_Completion.Rd man/Calc_Jaccard.Rd man/Calc_Jaccard_dist.Rd man/Calc_KO_presence_absence.Rd man/Calc_NRED_dist.Rd man/Calc_Norm_Euc.Rd man/Calc_P_NRED_dist.Rd man/Calc_P_dist.Rd man/Calc_Pairwise_KOs_Dist.Rd man/Calc_Z_scores.Rd man/Calc_ave_Z_score.Rd man/Calc_cor_matrix.Rd man/Calc_ind_KOs_bkgd_dist.Rd man/Calc_module_bkgd_dist.Rd man/Calc_module_completion.Rd man/Cluster_attributes.Rd man/Cluster_prune.Rd man/Create_Rank_Columns.Rd man/Fill_attribute_matrix.Rd man/General_features-class.Rd man/Generate_Random_Module.Rd man/Make_module_lists.Rd man/Normalize.Rd man/Pairwise_KOs_Calculation.Rd man/Remove_sd_zero.Rd man/array_fig.Rd man/plot_ind_bkgd.Rd
module_updater
sample_data/EBPR_RNAseq_Annotation_Matrix
sample_data/EBPR_RNAseq_Annotation_Matrix_bins_and_reference_sorted
sample_data/Genomes_Summary_EBPR_R1_R2_Spades.xlsx
sample_data/KEGG_Modules_14_04_2017.txt
sample_data/KEGG_Modules_14_04_2017_tab_delimited.txt
sample_data/ko00001.keg_tab_delimited
software_overview_notes
src/ComparePairwise.cpp
src/Cor_Matrix_C.cpp
src/RcppExports.cpp
src/statistics.h
src/which_rows_with_no_sd.cpp
vignettes/deprecated_vignettes.tar.gz
vignettes/wrapped_vignette.Rmd
Oyserman/ctr documentation built on Oct. 4, 2017, 12:06 a.m.