Files in PaulRegular/surveyTestr

Test Surveys by Simulating Spatially-Correlated Populations

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

CRAN-SUBMISSION

DESCRIPTION

NAMESPACE

NEWS.md R/data.R R/helper.R R/icc.R R/make_grid.R R/pipe.R R/plot_sim.R R/run_strat.R R/sim_dist.R R/sim_dist_spde.R R/sim_pop.R R/sim_survey.R R/test_surveys.R R/vis_sim.R README.md

SimSurvey.Rproj

_pkgdown.yml

analysis/3Ps_cod/cod_sim.R analysis/3Ps_cod/exports_for_Geoff.R analysis/3Ps_cod/exports_for_Jin.R analysis/3Ps_cod/imitate_cod_data.R analysis/American Plaice/imitate_plaice_fall_3NO_female.R analysis/American Plaice/imitate_plaice_fall_3NO_male.R analysis/American Plaice/imitate_plaice_spring_3NO_female.R analysis/American Plaice/imitate_plaice_spring_3NO_male.R analysis/American Plaice/plaice_fall_3NO_female_sim.R analysis/American Plaice/plaice_fall_3NO_male_sim.R analysis/American Plaice/plaice_spring_3NO_female_sim.R analysis/Cod/imitate_cod_fall_2J3KL.R analysis/Cod/imitate_cod_fall_3NO.R analysis/Cod/imitate_cod_spring_3NO.R analysis/Grids/3L grid.R analysis/Grids/3NO grid.R analysis/Witch flounder/Length-freq-witch.R analysis/Witch flounder/imitate_witch_fall_3NO.R analysis/paper/appendix_figures.R analysis/paper/cover_letter.Rmd

analysis/paper/cover_letter.docx

analysis/paper/drafting/sim_survey_paper DC.docx

analysis/paper/drafting/sim_survey_paper_v2.docx

analysis/paper/drafting/sim_survey_paper_v2_GJR comments.docx

analysis/paper/drafting/sim_survey_paper_v3.docx

analysis/paper/helper_functions.R

analysis/paper/plos.csl

analysis/paper/plos_submission/initial_submission/PLOS ONE Decision Revision required PONE-D-19-26904 - EMID9b3b6219cdb6f040.msg

analysis/paper/plos_submission/initial_submission/S1_appendix.docx

analysis/paper/plos_submission/initial_submission/S2_appendix.docx

analysis/paper/plos_submission/initial_submission/S3_appendix.docx

analysis/paper/plos_submission/initial_submission/cover_letter.docx

analysis/paper/plos_submission/initial_submission/manuscript.docx

analysis/paper/plos_submission/pre_production/PONE-D-19-26904R3_FTC.docx

analysis/paper/plos_submission/rev1/PLOS ONE Decision Revision required PONE-D-19-26904R1 - EMIDaad9b3453c6905ce.msg

analysis/paper/plos_submission/rev1/S1_appendix.docx

analysis/paper/plos_submission/rev1/S2_appendix.docx

analysis/paper/plos_submission/rev1/S3_appendix.docx

analysis/paper/plos_submission/rev1/drafting/cov-letter-rebuttal1-v1.docx

analysis/paper/plos_submission/rev1/drafting/manuscript_KPL.docx

analysis/paper/plos_submission/rev1/drafting/rebuttal_letter_GJR.docx

analysis/paper/plos_submission/rev1/drafting/sim_survey_paper_GJR.docx

analysis/paper/plos_submission/rev1/manuscript.docx

analysis/paper/plos_submission/rev1/manuscript_track_changes.docx

analysis/paper/plos_submission/rev2/PLOS ONE Decision Revision required PONE-D-19-26904R2 - EMIDacc707118f1e0816.msg

analysis/paper/plos_submission/rev2/S1_appendix.docx

analysis/paper/plos_submission/rev2/S2_appendix.docx

analysis/paper/plos_submission/rev2/S3_appendix.docx

analysis/paper/plos_submission/rev2/S4_appendix.docx

analysis/paper/plos_submission/rev2/drafting/manuscript.docx

analysis/paper/plos_submission/rev2/drafting/manuscript_track_changes - GJR KL PMR.docx

analysis/paper/plos_submission/rev2/drafting/manuscript_track_changes - GJR.docx

analysis/paper/plos_submission/rev2/drafting/manuscript_track_changes.docx

analysis/paper/plos_submission/rev2/drafting/manuscript_track_changes_v2.docx

analysis/paper/plos_submission/rev2/drafting/response_letter - GJR.docx

analysis/paper/plos_submission/rev2/drafting/response_letter - GJR_KPL.docx

analysis/paper/plos_submission/rev2/drafting/response_letter - GJR_KPL_PMR.docx

analysis/paper/plos_submission/rev2/manuscript.docx

analysis/paper/plos_submission/rev2/manuscript_track_changes.docx

analysis/paper/plos_submission/rev2/response_letter.docx

analysis/paper/plos_submission/rev3/S1_appendix.docx

analysis/paper/plos_submission/rev3/S2_appendix.docx

analysis/paper/plos_submission/rev3/S3_appendix.docx

analysis/paper/plos_submission/rev3/S4_appendix.docx

analysis/paper/plos_submission/rev3/manuscript.docx

analysis/paper/plos_submission/rev3/manuscript_with_track_changes.docx

analysis/paper/plos_submission/rev3/response_letter.docx

analysis/paper/references.bib

analysis/paper/render_paper.R analysis/paper/response_letter.Rmd

analysis/paper/response_letter.docx

analysis/paper/response_letter.md analysis/paper/sim_survey_paper.Rmd

analysis/paper/template.docx

analysis/presentation/dfo_style.css

analysis/presentation/references.bib

analysis/presentation/sim_survey_presentation.Rmd cran-comments.md

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.dbf

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.prj

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.sbn

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.sbx

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.shp

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.shp.xml

data-raw/DFO_NL_survey_strat/2HJ3KLNOP_Strata_Polygons_WGS84.shx

data-raw/DFO_NL_survey_units/POS2H.DAT

data-raw/DFO_NL_survey_units/POS2J.DAT

data-raw/DFO_NL_survey_units/POS3K.dat

data-raw/DFO_NL_survey_units/POS3L.DAT

data-raw/DFO_NL_survey_units/POS3N.DAT

data-raw/DFO_NL_survey_units/POS3O.DAT

data-raw/DFO_NL_survey_units/POS3P.DAT

data-raw/DFO_NL_survey_units/POS3PNS.DAT

data-raw/GADM_data/GADM_2.8_CAN_adm1.rds

data-raw/GADM_data/GADM_2.8_SPM_adm1.rds

data-raw/GEBCO_derived_bathy/GEBCO_derived_bathy.Rdata

data-raw/convert_to_sf_and_stars.R data-raw/survey_grid.R data-raw/survey_mesh.R

data/bathy.rda

data/land.rda

data/survey_grid.rda

data/survey_mesh.rda

inst/CITATION

inst/rmd/vis_sim.Rmd man/bathy.Rd man/convert_N.Rd man/dot-Q.Rd man/error_stats.Rd man/expand_surveys.Rd man/fibonacci.Rd

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/figures/logo.png

man/group_lengths.Rd man/icc.Rd man/land.Rd man/make_grid.Rd man/make_mesh.Rd man/object_size.Rd man/plot_trend.Rd man/reexports.Rd man/round_sim.Rd man/run_strat.Rd man/sim_R.Rd man/sim_abundance.Rd man/sim_ays_covar.Rd man/sim_ays_covar_spde.Rd man/sim_distribution.Rd man/sim_logistic.Rd man/sim_nlf.Rd man/sim_parabola.Rd man/sim_sets.Rd man/sim_survey.Rd man/sim_survey_parallel.Rd man/sim_vonB.Rd man/strat_data.Rd man/strat_error.Rd man/strat_means.Rd man/survey_grid.Rd man/survey_lite_mesh.Rd man/survey_mesh.Rd man/test_surveys.Rd man/vis_sim.Rd

pkgdown/favicon/favicon.ico

tests/informal_tests.R tutorial/tutorial.Rmd

vignettes/.gitignore

vignettes/custom_closures.Rmd

PaulRegular/surveyTestr documentation built on Sept. 21, 2023, 7:44 p.m.