API for PavlidisLab/gemma.R
A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses
| Global functions | |
|---|---|
| .body | Source code |
| .getResultSets | Man page Source code |
| accessField | Man page |
| addToFilter | Source code |
| blank_processor | Man page |
| checkBounds | Man page |
| encode | Man page |
| filter_properties | Man page |
| forget_gemma_memoised | Man page Source code |
| gemma.R | Man page |
| gemmaCache | Man page Source code |
| gemmaPath | Man page Source code |
| gemma_call | Man page |
| gemma_kable | Man page Source code |
| gemma_memoise | Man page Source code |
| get_all_pages | Man page |
| get_child_terms | Man page |
| get_dataset_annotations | Man page Source code |
| get_dataset_design | Man page Source code |
| get_dataset_differential_expression_analyses | Man page Source code |
| get_dataset_expression | Man page Source code |
| get_dataset_expression_for_genes | Man page Source code |
| get_dataset_object | Man page |
| get_dataset_platforms | Man page Source code |
| get_dataset_processed_expression | Man page Source code |
| get_dataset_quantitation_types | Man page Source code |
| get_dataset_raw_expression | Man page Source code |
| get_dataset_samples | Man page Source code |
| get_datasets | Man page Source code |
| get_datasets_by_ids | Man page Source code |
| get_differential_expression_values | Man page |
| get_gene_go_terms | Man page Source code |
| get_gene_locations | Man page Source code |
| get_gene_probes | Man page Source code |
| get_genes | Man page Source code |
| get_platform_annotations | Man page Source code |
| get_platform_datasets | Man page Source code |
| get_platform_element_genes | Man page Source code |
| get_platforms_by_ids | Man page Source code |
| get_result_sets | Man page Source code |
| get_taxa | Man page |
| get_taxa_by_ids | Man page Source code |
| get_taxon_datasets | Man page Source code |
| in_memory_cache | Source code |
| isEmpty | Man page |
| make_design | Man page |
| mem.getResultSets | Source code |
| memget_dataset_annotations | Source code |
| memget_dataset_design | Source code |
| memget_dataset_differential_expression_analyses | Source code |
| memget_dataset_expression_for_genes | Source code |
| memget_dataset_platforms | Source code |
| memget_dataset_processed_expression | Source code |
| memget_dataset_quantitation_types | Source code |
| memget_dataset_raw_expression | Source code |
| memget_dataset_samples | Source code |
| memget_datasets | Source code |
| memget_datasets_by_ids | Source code |
| memget_gene_go_terms | Source code |
| memget_gene_locations | Source code |
| memget_gene_probes | Source code |
| memget_genes | Source code |
| memget_platform_datasets | Source code |
| memget_platform_element_genes | Source code |
| memget_platforms_by_ids | Source code |
| memget_result_sets | Source code |
| memget_taxa_by_ids | Source code |
| memoise | Man page |
| memsearch_annotations | Source code |
| memsearch_gemma | Source code |
| nullCheck | Man page |
| processAnnotations | Man page |
| processCharacteristicValueObject | Man page |
| processDEA | Man page Source code |
| processDEMatrix | Man page |
| processDEcontrasts | Man page |
| processDatasetResultSets | Man page |
| processDatasets | Man page Source code |
| processDate | Source code |
| processDesignMatrix | Man page |
| processDifferentialExpressionAnalysisResultSetValueObject | Man page |
| processElements | Man page |
| processExpressionMatrix | Man page |
| processFile | Man page |
| processGO | Man page |
| processGemmaArray | Man page Source code |
| processGeneLocation | Man page |
| processGenes | Man page |
| processPlatforms | Man page |
| processQuantitationTypeValueObject | Man page |
| processResultSetFactors | Man page |
| processSamples | Man page |
| processSearchAnnotations | Man page Source code |
| processTaxon | Man page |
| process_search | Man page |
| read_gzipped_tsv | Source code |
| search_annotations | Man page Source code |
| search_datasets | Man page Source code |
| search_gemma | Man page Source code |
| setGemmaPath | Man page Source code |
| set_gemma_user | Man page Source code |
| subset_factorValues | Man page |
| update_result | Man page |
| validateBoolean | Man page Source code |
| validateConsolidate | Source code |
| validateFilter | Source code |
| validateID | Man page Source code |
| validateLimit | Man page Source code |
| validateOptionalID | Man page Source code |
| validateOptionalQuery | Man page Source code |
| validateOptionalTaxon | Man page Source code |
| validatePositiveInteger | Man page Source code |
| validateQuery | Man page Source code |
| validateResultType | Man page Source code |
| validateSingleID | Man page Source code |
| validateSingleQuery | Source code |
| validateSort | Man page Source code |
| validateTaxa | Man page Source code |
| validateTaxon | Man page Source code |
