analysis/01.SelectGenes/Markers_1.1/comparison_CellTypes-Markers_1.0-Markers_1.1_short.md
In PavlidisLab/neuroExpressoAnalysis: Marker genes of brain cell types and their use in analysis of whole tissue data
| | added| removed| Total genes in final list|
|:----------------------|-----:|-------:|-------------------------:|
|Astrocyte | 13| 19| 426|
|Microglia | 37| 25| 844|
|Microglia_activation | 6| 5| 187|
|Microglia_deactivation | 12| 8| 279|
|Noradrenergic | 2| 4| 135|
|Oligo | 18| 9| 435|
|ForebrainCholin | 4| 0| 106|
|BrainstemCholin | 1| 1| 40|
|Basket | 1| 1| 7|
|Bergmann | 8| 2| 71|
|CerebGranule | 0| 5| 12|
|Golgi | 4| 1| 30|
|Purkinje | 2| 1| 48|
|DentateGranule | 1| 0| 22|
|GabaPV | 0| 1| 30|
|GabaRelnCalb | 1| 0| 24|
|GabaVIPReln | 1| 0| 49|
|GabaSSTReln | 1| 0| 55|
|SpinalCordCholinergic | 1| 0| 128|
|Spiny | 1| 2| 74|
|Ependymal | 1| 0| 68|
|Dopaminergic | 1| 2| 60|
PavlidisLab/neuroExpressoAnalysis documentation built on Aug. 23, 2022, 7:42 a.m.
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| | added| removed| Total genes in final list| |:----------------------|-----:|-------:|-------------------------:| |Astrocyte | 13| 19| 426| |Microglia | 37| 25| 844| |Microglia_activation | 6| 5| 187| |Microglia_deactivation | 12| 8| 279| |Noradrenergic | 2| 4| 135| |Oligo | 18| 9| 435| |ForebrainCholin | 4| 0| 106| |BrainstemCholin | 1| 1| 40| |Basket | 1| 1| 7| |Bergmann | 8| 2| 71| |CerebGranule | 0| 5| 12| |Golgi | 4| 1| 30| |Purkinje | 2| 1| 48| |DentateGranule | 1| 0| 22| |GabaPV | 0| 1| 30| |GabaRelnCalb | 1| 0| 24| |GabaVIPReln | 1| 0| 49| |GabaSSTReln | 1| 0| 55| |SpinalCordCholinergic | 1| 0| 128| |Spiny | 1| 2| 74| |Ependymal | 1| 0| 68| |Dopaminergic | 1| 2| 60|
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