Example/Example.R
In PhHermann/LDJump: Estimating Variable Recombination Rates from Population Genetic Data
require(LDJump)
results = LDJump("/pathToSample/HatLandscapeN16Len1000000Nrhs15_th0.01_540_1.fa", alpha = 0.05, segLength = 1000,
pathLDhat = "/pathToLDhat", pathPhi = "/pathToPhi", format = "fasta", refName = NULL)
postscript("Results.eps", horiz = F)
plot(results[[1]], xlab = "Segments", ylab = "Estimated Recombination Rate", main = "Estimated recombination map with LDJump")
dev.off()
PhHermann/LDJump documentation built on Nov. 16, 2019, 12:53 p.m.
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require(LDJump)
results = LDJump("/pathToSample/HatLandscapeN16Len1000000Nrhs15_th0.01_540_1.fa", alpha = 0.05, segLength = 1000,
pathLDhat = "/pathToLDhat", pathPhi = "/pathToPhi", format = "fasta", refName = NULL)
postscript("Results.eps", horiz = F)
plot(results[[1]], xlab = "Segments", ylab = "Estimated Recombination Rate", main = "Estimated recombination map with LDJump")
dev.off()
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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