Global functions | |
---|---|
GISTIC | Man page |
GISTIC-class | Man page |
MAF | Man page |
MAF-class | Man page |
add_legend | Source code |
add_oncoprint | Source code |
add_oncoprint2 | Source code |
annovarToMaf | Man page Source code |
clinicalEnrichment | Man page Source code |
cluster_prot | Source code |
coOncoplot | Man page Source code |
createOncoMatrix | Source code |
dashboard | Source code |
detectCP | Source code |
dirichletClusters | Source code |
extractSignatures | Man page Source code |
filterCopyNumber | Source code |
fisherCorrection | Source code |
forestPlot | Man page Source code |
geneCloud | Man page Source code |
genesToBarcodes | Man page Source code |
genotypeMatrix | Man page Source code |
getClinicalData | Man page Man page |
getClinicalData,MAF-method | Man page |
getCytobandSummary | Man page Man page |
getCytobandSummary,GISTIC-method | Man page |
getFields | Man page Man page |
getFields,MAF-method | Man page |
getGeneSummary | Man page Man page Man page |
getGeneSummary,GISTIC-method | Man page |
getGeneSummary,MAF-method | Man page |
getOncoPlot | Source code |
getSampleSummary | Man page Man page Man page |
getSampleSummary,GISTIC-method | Man page |
getSampleSummary,MAF-method | Man page |
get_lp_data | Source code |
get_threshold | Source code |
get_titvCol | Source code |
get_vcColors | Source code |
gisticBubblePlot | Man page Source code |
gisticChromPlot | Man page Source code |
gisticMap | Source code |
gisticOncoPlot | Man page Source code |
icgcSimpleMutationToMAF | Man page Source code |
inferHeterogeneity | Man page Source code |
label_pos | Source code |
lollipopPlot | Man page Source code |
lollipopPlot2 | Man page Source code |
mafCompare | Man page Source code |
mafSummary | Man page Source code |
mafSurvival | Man page Source code |
mapMutsToSegs | Source code |
math.score | Man page Source code |
mutCountMatrix | Man page Source code |
oncodrive | Man page Source code |
oncoplot | Man page Source code |
oncostrip | Man page Source code |
oncotate | Man page Source code |
pancanComparison | Man page Source code |
parse_prot | Source code |
pfamDomains | Man page Source code |
plotApobecDiff | Man page Source code |
plotCBS | Source code |
plotCBSchr | Source code |
plotCBSsegments | Man page Source code |
plotClusters | Man page Source code |
plotEnrichmentResults | Man page Source code |
plotOncodrive | Man page Source code |
plotSignatures | Man page Source code |
plotTiTv | Man page Source code |
plotVaf | Man page Source code |
plotmafSummary | Man page Source code |
prepareMutSig | Man page Source code |
rainfallPlot | Man page Source code |
read.maf | Man page Source code |
readGistic | Man page Source code |
readSegs | Source code |
refineClusters | Source code |
repelPoints | Source code |
shiftPoints | Source code |
signatureEnrichment | Man page Source code |
somaticInteractions | Man page Source code |
sortByAnnotation | Source code |
sortByGeneOrder | Source code |
sortByMutation | Source code |
sortByMutationKeepGeneOrder | Source code |
subsetMaf | Man page Source code |
summarizeGistic | Source code |
summarizeMaf | Source code |
tcgaCompare | Man page Source code |
titv | Man page Source code |
transformSegments | Source code |
trinucleotideMatrix | Man page Source code |
validateMaf | Source code |
write.GisticSummary | Man page Source code |
write.mafSummary | Man page Source code |
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