R/time.colour.R

Eon <- c(Phanerozoic=0, Precambrian=541, end=4600)
	Era <- c(Cenozoic=0, Mesozoic=251.9, Palaeozoic=541, Proterozoic=2500, Archean=4000, Hadean=4600)
	Period <- c(Quarternary=0, Neogene=2.58, Palaeogene=23.03, Cretaceous=66, Jurassic=145, Triassic=201.3,Permian=251.9, Carboniferous=298.9,  Devonian=358.9, Silurian=419.2, Ordovician=443.8, Cambrian=485.4, Neoproterozoic=541, Mesoproterozoic=1000, Palaeoproterozoic=1600, Neoarchean=2500, Mesoarchean=2800, Palaeoarchean=3200, Eoarchean=4000, Hadean=4600)
	Period2 <- c(Quarternary=0, Tertiary=2.58, Cretaceous=66, Jurassic=145, Triassic=201.3,Permian=251.9, Carboniferous=298.9,  Devonian=358.9, Silurian=419.2, Ordovician=443.8, Cambrian=485.4, Neoproterozoic=541, Mesoproterozoic=1000, Palaeoproterozoic=1600, Neoarchean=2500, Mesoarchean=2800, Palaeoarchean=3200, Eoarchean=4000, Hadean=4600)
	Epoch <- c(Holocene=0, Pleistocene=0.012, Pliocene=2.58, Miocene=5.333, Oligocene=23.03, Eocene=33.9, Palaeocene=56, Late=66, Early=100.5, Late=145, Middle=163.5, Early=174.1, Late=201.3, Middle=237, Early=247.2, Lopingian=251.9, Guadalupian=259.1, Cisuralian=272.95, Late=298.9, Middle=307, Early=315.2, Late=323.2, Middle=330.9, Early=346.7, Late=358.9, Middle=382.7, Early=393.3, Pridoli=419.2, Ludlow=423, Wenlock=427.4, Llandovery=433.4, Late=443.8, Middle=458.4, Early=470, Furongian=485.4, Epoch3=497, Epoch2=509, Terreneuvian=521, 541, 4600)
	Age <- c(0, Calabrian=0.012, Gelasian=1.8, Piacenzian=2.58, Zanclean=3.6, Messinian=5.333, Tortonian=7.246, Serravallian=11.63, Langhian=13.82, Burdigalian=15.97, Aquitanian=20.44, Chattian=23.03, Rupelian=27.82, Priabonian=33.9, Bartonian=37.8, Lutetian=41.2, Ypresian=47.8, Thanetian=56, Selandian=59.2, Danian=61.6, Maastrichtian=66, Campanian=72.1, Santonian=83.6, Coniacian=86.3, Turonian=89.8, Cenomanian=93.9, Albian=100.5, Aptian=113, Barremian=125, Hauterivian=129.4, Valanginian=132.9, Berriasian=139.8, Tithonian=145, Kimmeridgian=152.1, Oxfordian=157.3, Callovian=163.5, Bathonian=166.1, Bajocian=168.3, Aalenian=170.3, Toarcian=174.1, Pliensbachian=182.7, Sinemurian=190.8, Hettangian=199.3, Rhaetian=201.3, Norian=208.5, Carnian=227, Ladinian=237, Anisian=242, Olenekian=247.2, Induan=251.2, Changhsingian=251.9, Wuchiapingian=254.14, Capitanian=259.1, Wordian=265.1, Roadian=268.8, Kungurian=272.95, Artinskian=283.5, Sakmarian=290.1, Asselian=295, Gzhelian=298.9, Kasimovian=303.7, Moscovian=307, Bashkirian=315.2, Serpukhovian=323.2, Visean=330.9, Tournaisian=346.7, Famennian=358.9, Frasnian=372.2, Givetian=382.7, Eifelian=387.7, Emsian=393.3, Pragian=407.6, Lochkovian=410.8, 419.2, Ludfordian=423, Gorstian=425.6, Homerian=427.4, Sheinwoodian=430.5, Telychian=433.4, Aeronian=438.5, Rhuddanian=440.8, Hirnantian=443.8, Katian=445.2, Sandbian=453, Darriwilian=458.4, Dapingian=467.3, Floian=470, Tremadocian=477.7, Age10=485.4, Jiangshanian=489.5, Paibian=494, Guzhangian=497, Drumian=500.5, Age5=504.5, Age4=509, Age3=514, Age2=521, Fortunian=529, 541, 4600)
Eon.colour <- c(Phanerozoic="#9AD9DD", Precambrian="#F74370")
Era.colour <- c(Cenozoic="#F2F91D", Mesozoic="#67C5CA", Palaeozoic="#99C08D", Proterozoic="#F73563", Archean="#F0047F", Hadean="#AE027E")
Period.colour <- c(Quarternary="#F9F97F", Neogene="#FFE619", Palaeogene="#F9F97F", Cretaceous="#7FC64E", Jurassic="#34B2C9", Triassic="#812B92",Permian="#F04028", Carboniferous="#67A599",  Devonian="#CB8C37", Silurian="#B3E1B6", Ordovician="#009270", Cambrian="#7FA056", Neoproterozoic="#FEB342", Mesoproterozoic="#FDB462", Palaeoproterozoic="#F74370", Neoarchean="#F99BC1", Mesoarchean="#F768A9", Palaeoarchean="#F4449F", Eoarchean="#DA037F", Hadean="#AE027E")
Period2.colour <- c(Quarternary="#F9F97F", Tertiary="#F2F91D", Cretaceous="#7FC64E", Jurassic="#34B2C9", Triassic="#812B92",Permian="#F04028", Carboniferous="#67A599",  Devonian="#CB8C37", Silurian="#B3E1B6", Ordovician="#009270", Cambrian="#7FA056", Neoproterozoic="#FEB342", Mesoproterozoic="#FDB462", Palaeoproterozoic="#F74370", Neoarchean="#F99BC1", Mesoarchean="#F768A9", Palaeoarchean="#F4449F", Eoarchean="#DA037F", Hadean="#AE027E")
Epoch.colour <- c(Holocene="#FEF2EC", Pleistocene="#FFF2AE", Pliocene="#FFFF99", Miocene="#FFFF00", Oligocene="#FDC07A", Eocene="#FDB46C", Palaeocene="#FDA75F", Late="#A6D84A", Early="#8CCD57", Late="#B3E3EE", Middle="#80CFD8", Early="#42AED0", Late="#BD8CC3", Middle="#B168B1", Early="#983999", Lopingian="#FBA794", Guadalupian="#FB745C", Cisuralian="#EF5845", Late="#BFD0BA", Middle= "#A6C7B7", Early="#8CBEB4", Late="#B3BE6C", Middle="#99B46C", Early="#80AB6C", Late="#F1E19D", Middle="#F1C868", Early="#E5AC4D", Pridoli="#E6F5E1", Ludlow="#BFE6CF", Wenlock="#B3E1C2", Llandovery="#99D7B3", Late="#7FCA93", Middle="#4DB47E", Early="#1A9D6F", Furongian="#B3E095", Epoch3="#A6CF86", Epoch2="#99C078", Terreneuvian="#8CB06C", "white", "white")
Age.colour <- c("#FEF2EC", Calabrian="#FFF2BA", Gelasian="#FFEDB3", Piacenzian="#FFFFBF", Zanclean="#FFFFB3", Messinian="#FFFF73", Tortonian="#FFFF66", Serravallian="#FFFF59", Langhian="#FFFF4D", Burdigalian="#FFFF41", Aquitanian="#FFFF33", Chattian="#FEE6AA", Rupelian="#FED99A", Priabonian="#FDCDA1", Bartonian="#FDC091", Lutetian="#FCB482", Ypresian="#FCA773", Thanetian="#FDBF6F", Selandian="#FEBF65", Danian="#FDB462", Maastrichtian="#F2FA8C", Campanian= "#E6F47F", Santonian="#D9EF74", Coniacian="#CCE968", Turonian="#BFE35D", Cenomanian="#B3DE53", Albian= "#CCEA97", Aptian="#BFE48A", Barremian="#B3DF7F", Hauterivian="#A6D975", Valanginian="#99D36A", Berriasian="#8CCD60", Tithonian="#D9F1F7", Kimmeridgian="#CCECF4", Oxfordian="#BFE7F1", Callovian="#BFE7E5", Bathonian="#B3E2E3", Bajocian="#A6DDE0", Aalenian="#9AD9DD", Toarcian="#99CEE3", Pliensbachian="#80C5DD", Sinemurian="#67BCD8", Hettangian="#4EB3D3", Rhaetian="#E3B9DB", Norian="#D6AAD3", Carnian="#C99BCB", Ladinian="#C983BF", Anisian="#BC75B7", Olenekian="#B051A5", Induan="#A4469F", Changhsingian="#FCC0B2", Wuchiapingian="#FCB4A2", Capitanian="#FB9A85", Wordian="#FB8D76", Roadian="#FB8069", Kungurian="#E38776", Artinskian="#E37B68", Sakmarian="#E36F5C", Asselian="#E36350", Gzhelian="#CCD4C7", Kasimovian="#BFD0C5", Moscovian="#B3CBB9", Bashkirian="#99C2B5", Serpukhovian="#BFC26B", Visean="#A6B96C", Tournaisian="#8CB06C", Famennian="#F2EDC5", Frasnian="#F2EDAD", Givetian="#F1E185", Eifelian="#F1D576", Emsian="#E5D075", Pragian="#E5C468", Lochkovian="#E5B75A", "#E6F5E1", Ludfordian="#D9F0DF", Gorstian="#CCECDD", Homerian="#CCEBD1", Sheinwoodian="#BFE6C3", Telychian="#BFE6CF", Aeronian="#B3E1C2", Rhuddanian="#A6DCB5", Hirnantian="#A6DBAB", Katian="#99D69F", Sandbian="#8CD094", Darriwilian="#74C69C", Dapingian="#66C092", Floian="#41B087", Tremadocian="#33A97E", Age10="#E6F5C9", Jiangshanian="#D9F0BB", Paibian="#CCEBAE", Guzhangian="#CCDFAA", Drumian="#BFD99D", Age5="#B3D492", Age4="#B3CA8E", Age3="#A6C583", Age2="#A6BA80", Fortunian="#99B575", "white", "white")
PuttickMacroevolution/MCMCtreeR documentation built on Nov. 24, 2019, 5:22 a.m.