API for RGLab/CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing

Global functions
.cpp_parseWorkspace Source code
.getFileNames Source code
.getKeyword Source code
.getKeywordsBySampleID Source code
.getKeywordsBySampleName Source code
.getPath Source code
.getSampleGroups Source code
.getSamples Source code
.onLoad Source code
.parseDivaWorkspace Source code
.parseDivaWorkspace_old Source code
.parseWorkspace Source code
CytoML.par.get Man page
CytoML.par.init Man page Source code
CytoML.par.set Man page
DerivedParameterNode Source code
DerivedParametersNode Source code
GateSetNode Source code
GatingSet Man page
GatingSet,character,character-method Man page
GatingSet2cytobank Man page Source code
GatingSet2flowJo Man page Source code
SampleListNode Source code
addAsinhtGml1.5 Source code
addAsinhtGml2 Source code
addBooleanAndGateNode Source code
addBooleanNotGateNode Source code
addBooleanOrGateNode Source code
addCompensation Source code
addCompensationRef Source code
addCustomInfo Man page Source code
addDebugMessage Source code
addDimensionContents Source code
addDimensions Source code
addEllipsoidGateNode Source code
addExperimentInfo Source code
addGate Source code
addGateSets Source code
addGateWithParent Source code
addHyperlogtGml2 Source code
addLintGml2 Source code
addLogicletGml2 Source code
addLogtGml2 Source code
addObjectToGatingML Source code
addPolygonGateNode Source code
addQuadGateNode Source code
addRatioGml1.5 Source code
addRatiotGml2 Source code
addRectGateMinMax Source code
addRectangleGateNode Source code
addReferencedObjectsToEnv Source code
base64decode_cytobank Source code
base64encode_cytobank Source code
boolXmlNode Source code
booleanNode Source code
ce_get_compensations Source code
ce_get_panels Source code
ce_get_samples Source code
ce_get_transformations Source code
closeWorkspace Man page
collectTransform Source code
compensate,GatingSet,graphGML-method Man page
constructPopNode Source code
constructTree Man page Source code
createOrUseGml2RatioTransformation Source code
createOrUseGml2Transformation Source code
createTransformIdentifier Source code
customInfoNodeForGate Source code
cytobank2GatingSet Man page Source code
cytobankExperiment Man page Source code
cytobank_to_gatingset Man page Source code
cytobank_to_gatingset.cytobank_experiment Man page Source code
cytobank_to_gatingset.default Man page Source code
datasetNode Source code
decisionHelper Source code
dispatchGatingML2Transform Source code
dispatchTransform Source code
diva_get_sample_groups Man page Source code
diva_get_samples Man page
diva_to_gatingset Man page Source code
diva_workspace-class Man page
doubleCheckExistanceOfFilter Source code
doubleCheckExistanceOfParameter Source code
export_comp_trans Source code
export_gates_cytobank Source code
extend Man page Source code
extend.ellipsoidGate Man page Source code
extend.polygonGate Man page Source code
extend.rectangleGate Man page Source code
extend.rectangleGate1d Source code
fasinhTr Source code
filterIdtoXMLId Source code
findParent Source code
fix.ellipsoidGate Source code
fix.rectangleGate Source code
fixChnlName Source code
fjSettings Source code
fj_ws_get_keywords Man page Source code
fj_ws_get_sample_groups Man page Source code
fj_ws_get_samples Man page Source code
flinTr Source code
flogTr Source code
flowjo_to_gatingset Man page
flowjo_workspace-class Man page
flowjo_ws_close Man page
fratioTr Source code
gateAttr Source code
gateNode Source code
gateNode.default Source code
gateNode.ellipsoidGate Source code
gateNode.polygonGate Source code
gateNode.quadGate Source code
gateNode.rectangleGate Source code
gating,graphGML,GatingSet-method Man page
gating.graphGML Source code
gatingset_to_cytobank Man page Source code
gatingset_to_flowjo Man page Source code
generate_trans Source code
genid Source code
getBounds Source code
getChildren,graphGML,character-method Man page
getCompensationMatrices.graphGML Man page Source code
getCustomNodeInfo Source code
getDetectorList Source code
getElementValueAsNumeric Source code
getFJWSubsetIndices Man page Source code
getFileNames Source code
getFluorochromeList Source code
getGate,graphGML,character-method Man page
getGatingML2RatioParameterList Source code
getKeywords Man page Source code
getNodes,graphGML-method Man page
getObjectId Source code
getParameterList Source code
getParent,graphGML,character-method Man page
getSampleGroups Man page Source code
getSamples Man page Source code
getSide Source code
getSpilloverMat Source code
getTransformationList Source code
getTransformationListForQuadrantGate Source code
getTransformationListGml2 Source code
getTransformations.graphGML Man page Source code
get_global_sheets Source code
get_panel_per_file Source code
get_pd Source code
graphGML-class Man page
graphNode Source code
groupNode Source code
gs_compare_cytobank_counts Man page Source code
hyperlogTr Source code
inverse Source code
inverse.ellipsoidGate Source code
inverse.polygon Source code
inverse.polygonGate Source code
inverse.rectangleGate Source code
inverseTransGate Source code
is.cytof Source code
isIdWrittenToXMLAlready Source code
isNCNameChar Source code
keywordNode Source code
logicleTr Source code
makeCall Source code
matchPath Man page Source code
normalize_gate_path Source code
objectNameToObject Source code
openDiva Man page Source code
open_cytobank_experiment Man page Source code
open_diva_xml Man page Source code
open_flowjo_xml Man page Source code
paramerterNode Source code
parse.gateInfo Man page Source code
parseWorkspace,diva_workspace-method Man page
parseWorkspace,flowjo_workspace-method Man page
plot,graphGML,missing-method Man page
print.cytobank_experiment Source code
processGate Source code
range.GatingHierarchy Man page Source code
read.gatingML Source code
read.gatingML.cytobank Man page Source code
resolveTransformationReference Source code
sampleNode Source code
shouldTransformationBeSkipped Source code
show,diva_workspace-method Man page
show,flowjo_workspace-method Man page
show,graphGML-method Man page
smartTreeParse Source code
spilloverMatrixNode Source code
spilloverNodes Source code
subPopulationNode Source code
targs Source code
transCompensation Source code
transDg1polynomial Source code
transEH Source code
transExponential Source code
transHyperLog Source code
transHyperbolicSin Source code
transInvSplitScale Source code
transInverseHyperbolicSin Source code
transLogarithm Source code
transQuadratic Source code
transRatio Source code
transSplitScale Source code
transSquareroot Source code
transformationNode Source code
workspaceNode Source code
write.gatingML Source code
xmlDimensionNode Source code
xmlElementsByTagName Source code
xmlTag Source code
RGLab/CytoML documentation built on Nov. 6, 2019, 4:59 p.m.