API for RGLab/flowCore
flowCore: Basic structures for flow cytometry data

Global functions
!,filter-method Man page
$,filterSummary-method Man page
$,flowSet-method Man page
$.flowFrame Man page
%&% Man page
%&%,ANY-method Man page
%&%,filter,filter-method Man page
%&%-methods Man page
%in% Man page
%in%,ANY,filterReference-method Man page
%in%,ANY,filterResult-method Man page
%in%,ANY,manyFilterResult-method Man page
%in%,ANY,multipleFilterResult-method Man page
%in%,flowFrame,boundaryFilter-method Man page
%in%,flowFrame,complementFilter-method Man page
%in%,flowFrame,ellipsoidGate-method Man page
%in%,flowFrame,expressionFilter-method Man page
%in%,flowFrame,filterResult-method Man page
%in%,flowFrame,intersectFilter-method Man page
%in%,flowFrame,kmeansFilter-method Man page
%in%,flowFrame,norm2Filter-method Man page
%in%,flowFrame,polygonGate-method Man page
%in%,flowFrame,polytopeGate-method Man page
%in%,flowFrame,quadGate-method Man page
%in%,flowFrame,rectangleGate-method Man page
%in%,flowFrame,sampleFilter-method Man page
%in%,flowFrame,subsetFilter-method Man page
%in%,flowFrame,timeFilter-method Man page
%in%,flowFrame,transformFilter-method Man page
%in%,flowFrame,unionFilter-method Man page
%in%-methods Man page
%on% Man page
%on%,ANY,flowSet-method Man page
%on%,filter,parameterTransform-method Man page
%on%,filter,transform-method Man page
%on%,filter,transformList-method Man page
%on%,parameterTransform,flowFrame-method Man page
%on%,transform,flowFrame-method Man page
%on%,transformList,flowFrame-method Man page
%on%,transformList,flowSet-method Man page
%on%-methods Man page
%subset% Man page
%subset%,ANY-method Man page
%subset%,filter,filter-method Man page
%subset%,list,filter-method Man page
&,filter,filter-method Man page
&,filter,list-method Man page
&,list,filter-method Man page
*,rectangleGate,rectangleGate-method Man page
.check_spillover Source code
.estimateLogicle Source code
.flowParamMatch Source code
.getIndexSort Source code
.inverseLogicleTransform Source code
.lgclTrans Source code
.readFCSdataRaw Source code
.readFCSdataRawMultiple Source code
.transform Source code
<,flowFrame,ANY-method Man page
<=,flowFrame,ANY-method Man page
==,filterResult,flowFrame-method Man page
==,flowFrame,filterResult-method Man page
==,flowFrame,flowFrame-method Man page
>,flowFrame,ANY-method Man page
>=,flowFrame,ANY-method Man page
CytoExploreR_.estimateLogicle Man page Source code
CytoExploreR_exports Man page
EH Source code
EHtrans Man page Source code
EHtrans-class Man page
FCSTransTransform Man page Source code
GvHD Man page
LdFlags Source code
Subset Man page
Subset,flowFrame,filter-method Man page
Subset,flowFrame,logical-method Man page
Subset,flowFrame-method Man page
Subset,flowSet,ANY Man page
Subset,flowSet,ANY-method Man page
Subset,flowSet,filterResultList-method Man page
Subset,flowSet,list-method Man page
Subset-methods Man page
[,filterResultList,ANY-method Man page
[,flowFrame,ANY-method Man page
[,flowFrame,filter-method Man page
[,flowFrame,filterResult-method Man page
[,flowSet,ANY-method Man page
[,flowSet-method Man page
[,multipleFilterResult,ANY-method Man page
[,rectangleGate,ANY-method Man page
[,rectangleGate,character-method Man page
[[,filterResult,ANY-method Man page
[[,filterResultList,ANY-method Man page
[[,filterSummary,character-method Man page
[[,filterSummary,numeric-method Man page
[[,flowSet,ANY-method Man page
[[,flowSet-method Man page
[[,logicalFilterResult,ANY-method Man page
[[,manyFilterResult,ANY-method Man page
[[,manyFilterResult-method Man page
[[,multipleFilterResult,ANY-method Man page
[[,multipleFilterResult-method Man page
[[<-,flowFrame-method Man page
[[<-,flowSet,ANY,ANY,flowFrame-method Man page
[[<-,flowSet-method Man page
arcsinhTransform Man page Source code
as.data.frame.manyFilterResult Man page Source code
asinht Man page Source code
asinht-class Man page
asinhtGml2 Man page Source code
asinhtGml2-class Man page
biexponentialTransform Man page Source code
biexponential_transform Source code
binaryHelper Source code
booleanGate,filter-class Man page
boundaryFilter Man page Source code
boundaryFilter-class Man page
c,transformList-method Man page
call,filter-method Man page
cbind2,flowFrame,matrix-method Man page
cbind2,flowFrame,numeric-method Man page
char2ExpressionFilter Man page Source code
character,filter-method Man page
characterOrNumeric Man page
characterOrNumeric-class Man page
characterOrParameters Man page
characterOrParameters-class Man page
characterOrTransformation Man page
characterOrTransformation-class Man page
checkClass Source code
checkOffset Man page Source code
check_channel_alias Source code
cleanup Man page Source code
coerce Man page
coerce,call,filter-method Man page
coerce,character,filter-method Man page
coerce,complementFilter,call-method Man page
coerce,complementFilter,logical-method Man page
coerce,ellipsoidGate,polygonGate-method Man page
coerce,environment,flowSet-method Man page
coerce,factor,filterResult-method Man page
coerce,filter,call-method Man page
coerce,filter,logical-method Man page
coerce,filterReference,call-method Man page
coerce,filterReference,concreteFilter-method Man page
coerce,filterResult,logical-method Man page
coerce,filterResultList,list-method Man page
coerce,filterSummary,data.frame-method Man page
coerce,flowFrame,flowSet-method Man page
coerce,flowSet,flowFrame-method Man page
coerce,flowSet,list-method Man page
coerce,formula,filter-method Man page
coerce,intersectFiler,call-method Man page
coerce,intersectFilter,call-method Man page
coerce,intersectFilter,logical-method Man page
coerce,list,filterResultList-method Man page
coerce,list,flowSet-method Man page
coerce,list,transformList-method Man page
coerce,logical,filterResult-method Man page
coerce,logicalFilterResult,logical-method Man page
coerce,matrix,filterResult-method Man page
coerce,name,filter-method Man page
coerce,nullParameter,character-method Man page
coerce,numeric,filterResult-method Man page
coerce,parameters,character-method Man page
coerce,randomFilterResult,logical-method Man page
coerce,ratio,character-method Man page
coerce,rectangleGate,polygonGate-method Man page
coerce,subsetFilter,call-method Man page
coerce,subsetFilter,logical-method Man page
coerce,transform,character-method Man page
coerce,unionFilter,call-method Man page
coerce,unionFilter,logical-method Man page
coerce,unitytransform,character-method Man page
collapseDesc Source code
collapse_desc Man page Source code
colnames,flowFrame-method Man page
colnames,flowSet-method Man page
colnames,transformList-method Man page
colnames<- Man page
colnames<-,flowFrame-method Man page
colnames<-,flowSet-method Man page
cols_to_pd Source code
compatibleFilters Source code
compensate Man page
compensate,flowFrame,compensation-method Man page
compensate,flowFrame,data.frame-method Man page
compensate,flowFrame,matrix-method Man page
compensate,flowSet,ANY-method Man page
compensate,flowSet,data.frame-method Man page
compensate,flowSet,list-method Man page
compensatedParameter Man page Source code
compensatedParameter-class Man page
compensation Man page Source code
compensation-class Man page
complementFilter Man page
complementFilter-class Man page
concreteFilter Man page
concreteFilter-class Man page
convertRawBytes Source code
copyFlowFrame Source code
copyFlowSet Source code
decisionTreeGate,filter-class Man page
decompensate Man page
decompensate,flowFrame,compensation-method Man page
decompensate,flowFrame,data.frame-method Man page
decompensate,flowFrame,matrix-method Man page
decompensate-methods Man page
description Man page
description,flowFrame-method Man page
description<-,flowFrame,ANY-method Man page
description<-,flowFrame,list-method Man page
dg1polynomial Man page Source code
dg1polynomial-class Man page
dim Man page
dim,flowFrame-method Man page
each_col Man page
each_col,flowFrame-method Man page
each_col-methods Man page
each_row Man page
each_row,flowFrame-method Man page
each_row-methods Man page
ellipsoidGate Man page Source code
ellipsoidGate,filter-class Man page
ellipsoidGate-class Man page
estimateLogicle Man page Source code
estimateLogicle.flowFrame Source code
estimateMedianLogicle Man page Source code
eval,EHtrans,missing-method Man page
eval,asinht,missing-method Man page
eval,asinhtGml2,missing-method Man page
eval,compensatedParameter,missing-method Man page
eval,dg1polynomial,missing-method Man page
eval,exponential,missing-method Man page
eval,filterReference,missing-method Man page
eval,hyperlog,missing-method Man page
eval,hyperlogtGml2,missing-method Man page
eval,invsplitscale,missing-method Man page
eval,lintGml2,missing-method Man page
eval,logarithm,missing-method Man page
eval,logicletGml2,missing-method Man page
eval,logtGml2,missing-method Man page
eval,quadratic,missing-method Man page
eval,ratio,missing-method Man page
eval,ratiotGml2,missing-method Man page
eval,sinht,missing-method Man page
eval,splitscale,missing-method Man page
eval,squareroot,missing-method Man page
eval,transformReference,missing-method Man page
eval,unitytransform,missing-method Man page
exponential Man page Source code
exponential-class Man page
expressionFilter Man page Source code
expressionFilter-class Man page
exprs Man page
exprs,flowFrame-method Man page
exprs<- Man page
exprs<-,flowFrame,ANY-method Man page
exprs<-,flowFrame,matrix-method Man page
fcsTextParse Source code
fcs_text_parse Source code
featureNames Man page
featureNames,flowFrame-method Man page
filter Man page
filter,filter-method Man page
filter,flowFrame,filter-method Man page
filter,flowFrame,norm2Filter Man page
filter,flowFrame,polygonGate Man page
filter,flowFrame,rectangleGate Man page
filter,flowFrame-method Man page
filter,flowSet,filter-method Man page
filter,flowSet,filterList-method Man page
filter,flowSet,list-method Man page
filter-and-methods Man page
filter-class Man page
filter-in-methods Man page
filter-method Man page
filter-methods Man page
filter-on-methods Man page
filterDetails Man page
filterDetails,filterResult,ANY-method Man page
filterDetails,filterResult,missing-method Man page
filterDetails-methods Man page
filterDetails<- Man page
filterDetails<-,filterResult,character,ANY-method Man page
filterDetails<-,filterResult,character,filter-method Man page
filterDetails<-,filterResult,character,setOperationFilter-method Man page
filterList Man page Source code
filterList-class Man page
filterReference Man page
filterReference,environment,character-method Man page
filterReference-class Man page
filterResult Man page
filterResult-class Man page
filterResultList Man page
filterResultList-class Man page
filterSummary Man page
filterSummary-class Man page
filterSummaryList Man page
filterSummaryList-class Man page
filtergate,filter-class Man page
filters Man page Source code
filters-class Man page
filtersList Man page Source code
filtersList-class Man page
findOffsets Source code
findTimeChannel Source code
flowCore Man page
flowCore-package Man page
flowDefaultADF Source code
flowFrame Man page Source code
flowFrame-class Man page
flowFrame2env Source code
flowFrameToMatrix Source code
flowSet Man page Source code
flowSet-class Man page
flowSet_to_list Man page Source code
formula,filter-method Man page
fr_append_cols Man page Source code
fsApply Man page
fsApply,flowSet,ANY Man page
fsApply,flowSet-method Man page
getChannelMarker Man page Source code
getIdentityMatrixForParameter Source code
getIndexSort Man page
getIndexSort,flowFrame-method Man page
getIndexSort-methods Man page
getSpilloverFromFlowFrame Source code
guid Source code
head,flowFrame-method Man page
header Source code
hyperlog Man page Source code
hyperlog-class Man page
hyperlog_transform Source code
hyperlogtGml2 Man page Source code
hyperlogtGml2-class Man page
identifier Man page
identifier,NULL-method Man page
identifier,compensation-method Man page
identifier,filter-method Man page
identifier,filterList-method Man page
identifier,filterReference-method Man page
identifier,filterResult-method Man page
identifier,flowFrame-method Man page
identifier,flowSet-method Man page
identifier,normalization-method Man page
identifier,transform-method Man page
identifier,transformList-method Man page
identifier-methods Man page
identifier<- Man page
identifier<-,compensation,character-method Man page
identifier<-,filter,character-method Man page
identifier<-,filterList,character-method Man page
identifier<-,flowFrame,ANY-method Man page
identifier<-,flowFrame-method Man page
identifier<-,flowSet,ANY-method Man page
identifier<-,normalization,character-method Man page
identifier<-,transformList,character-method Man page
inPolygon Source code
inPolytope Source code
initialize,dg1polynomial-method Man page
initialize,flowFrame-method Man page
initialize,parameterFilter-method Man page
initialize,ratio-method Man page
initialize,ratiotGml2-method Man page
initialize,singleParameterTransform-method Man page
intersectFilter Man page
intersectFilter-class Man page
intersectFilter-method Man page
inverseLogicleTransform Man page Source code
inverseLogicleTransform.default Source code
inverseLogicleTransform.transform Source code
inverseLogicleTransform.transformList Source code
invsplitscale Man page Source code
invsplitscale-class Man page
isFCSfile Man page Source code
isValidParameters Source code
keyword Man page
keyword,flowFrame,character-method Man page
keyword,flowFrame,function-method Man page
keyword,flowFrame,list-method Man page
keyword,flowFrame,missing-method Man page
keyword,flowSet,ANY-method Man page
keyword,flowSet,list-method Man page
keyword-methods Man page
keyword<- Man page
keyword<-,flowFrame,ANY-method Man page
keyword<-,flowFrame,character-method Man page
keyword<-,flowFrame,list-method Man page
keyword<-,flowSet,list-method Man page
kmeansFilter Man page Source code
kmeansFilter-class Man page
kwfilter Source code
length,filter-method Man page
length,filterReference-method Man page
length,filterSummary-method Man page
length,flowSet-method Man page
length,kmeansFilter-method Man page
length,logicalFilterResult-method Man page
length,manyFilterResult-method Man page
length,multipleFilterResult-method Man page
linearTransform Man page Source code
lintGml2 Man page Source code
lintGml2-class Man page
lnTransform Man page Source code
logTransform Man page Source code
logarithm Man page Source code
logarithm-class Man page
logicalFilterResult Man page
logicalFilterResult-class Man page
logicleTransform Man page Source code
logicle_transform Source code
logicletGml2 Man page Source code
logicletGml2-class Man page
logtGml2 Man page Source code
logtGml2-class Man page
makeFCSparameters Source code
manyFilterResult Man page Source code
manyFilterResult-class Man page
markernames Man page
markernames,flowFrame-method Man page
markernames,flowSet-method Man page
markernames<- Man page
markernames<-,flowFrame-method Man page
markernames<-,flowSet-method Man page
multiRangeGate Source code
multipleFilterResult Man page
multipleFilterResult-class Man page
name,filter-method Man page
names Man page
names,filterResultList-method Man page
names,filterSummary-method Man page
names,flowFrame-method Man page
names,logicalFilterResult-method Man page
names,manyFilterResult-method Man page
names,multipleFilterResult-method Man page
names<-,multipleFilterResult,ANY-method Man page
names<-,multipleFilterResult-method Man page
ncol,flowFrame-method Man page
norm2Filter,filter-class Man page
normalization Man page Source code
normalization-class Man page
normalize Man page
normalize,flowSet,normalization-method Man page
nrow,flowFrame-method Man page
nullParameter Man page
nullParameter-class Man page
pData,flowSet-method Man page
pData<-,flowSet,data.frame-method Man page
parDefault Source code
parameterFilter-class Man page
parameterTransform Man page Source code
parameterTransform-class Man page
parameters Man page
parameters,compensation-method Man page
parameters,filter-method Man page
parameters,filterReference-method Man page
parameters,filterResult-method Man page
parameters,filterResultList-method Man page
parameters,flowFrame,missing-method Man page
parameters,flowFrame-method Man page
parameters,manyFilterResult-method Man page
parameters,normalization-method Man page
parameters,nullParameter-method Man page
parameters,parameterFilter-method Man page
parameters,parameterTransform-method Man page
parameters,ratio-method Man page
parameters,ratiotGml2-method Man page
parameters,setOperationFilter-method Man page
parameters,singleParameterTransform-method Man page
parameters,transform-method Man page
parameters,transformReference-method Man page
parameters-class Man page
parameters-methods Man page
parameters<- Man page
parameters<-,dg1polynomial,character-method Man page
parameters<-,dg1polynomial,parameters-method Man page
parameters<-,dg1polynomial,transform-method Man page
parameters<-,flowFrame,AnnotatedDataFrame-method Man page
parameters<-,parameterFilter,character-method Man page
parameters<-,parameterFilter,list-method Man page
parameters<-,parameterFilter,transform-method Man page
parameters<-,singleParameterTransform,character-method Man page
parameters<-,singleParameterTransform,transform-method Man page
parseDots Source code
parseMatrixFromString Source code
parse_pd_for_read_fs Source code
phenoData,flowSet-method Man page
phenoData<-,flowSet,ANY-method Man page
phenoData<-,flowSet,phenoData-method Man page
plot,flowFrame,ANY-method Man page
plot,flowFrame-method Man page
plot,flowSet,ANY-method Man page
plot,flowSet-method Man page
poly_centroid Source code
polygonGate Man page Source code
polygonGate,filter-class Man page
polygonGate-class Man page
polytopeGate Man page Source code
polytopeGate-class Man page
popNames Source code
prepareInputs Source code
prepareSet Source code
print,filterSummary-method Man page
quadGate Man page Source code
quadGate-class Man page
quadratic Man page Source code
quadratic-class Man page
quadraticTransform Man page Source code
randomFilterResult Man page
randomFilterResult-class Man page
range Man page
range,flowFrame-method Man page
ratio Man page Source code
ratio-class Man page
ratiotGml2 Man page Source code
ratiotGml2-class Man page
rbind2,flowFrame,flowSet-method Man page
rbind2,flowSet,flowFrame-method Man page
rbind2,flowSet,flowSet,missing-method Man page
rbind2,flowSet,flowSet-method Man page
rbind2,flowSet,missing Man page
rbind2,flowSet,missing-method Man page
read.FCS Man page Source code
read.FCSheader Man page Source code
read.flowSet Man page Source code
readFCSdata Source code
readFCSgetPar Source code
readFCSheader Source code
readFCStext Source code
rectangleGate Man page Source code
rectangleGate,filter-class Man page
rectangleGate-class Man page
resolve Source code
resolveTransformReference Source code
resolveTransforms Source code
rotate_gate Man page Source code
rotate_gate.default Man page Source code
rotate_gate.ellipsoidGate Source code
rotate_gate.polygonGate Source code
rotate_gate.quadGate Source code
rotate_gate.rectangleGate Source code
sampleFilter Man page Source code
sampleFilter-class Man page
sampleNames,flowSet-method Man page
sampleNames<-,flowSet,ANY-method Man page
scaleTransform Man page Source code
scale_gate Man page Source code
scale_gate.default Man page Source code
scale_gate.ellipsoidGate Source code
scale_gate.polygonGate Source code
scale_gate.quadGate Source code
scale_gate.rectangleGate Source code
setOperationFilter Man page
setOperationFilter-class Man page
shift_gate Man page Source code
shift_gate.default Man page Source code
shift_gate.ellipsoidGate Source code
shift_gate.polygonGate Source code
shift_gate.quadGate Source code
shift_gate.rectangleGate Source code
show,boundaryFilter-method Man page
show,compensation-method Man page
show,complementFilter-method Man page
show,ellipsoidGate-method Man page
show,expressionFilter-method Man page
show,filter-method Man page
show,filterList-method Man page
show,filterReference-method Man page
show,filterResult-method Man page
show,filterResultList-method Man page
show,filterSummary-method Man page
show,filters-method Man page
show,filtersList-method Man page
show,flowFrame-method Man page
show,flowSet-method Man page
show,intersectFilter-method Man page
show,kmeansFilter-method Man page
show,manyFilterResult-method Man page
show,multipleFilterResult-method Man page
show,polygonGate-method Man page
show,polytopeGate-method Man page
show,quadGate-method Man page
show,rectangleGate-method Man page
show,sampleFilter-method Man page
show,subsetFilter-method Man page
show,timeFilter-method Man page
show,transform-method Man page
show,transformFilter-method Man page
show,transformMap-method Man page
show,unionFilter-method Man page
show,unitytransform-method Man page
singleParameterTransform-class Man page
sinht Man page Source code
sinht-class Man page
solveEH Source code
sortBytes Source code
sortBytes1 Source code
spill2txt Source code
spill_to_string Source code
spillover Man page
spillover,flowFrame-method Man page
split Man page
split,flowFrame,ANY-method Man page
split,flowFrame,character-method Man page
split,flowFrame,factor-method Man page
split,flowFrame,filter-method Man page
split,flowFrame,logicalFilterResult-method Man page
split,flowFrame,manyFilterResult-method Man page
split,flowFrame,multipleFilterResult-method Man page
split,flowFrame,numeric-method Man page
split,flowSet,ANY-method Man page
split,flowSet,character-method Man page
split,flowSet,factor-method Man page
split,flowSet,filter-method Man page
split,flowSet,filterResult-method Man page
split,flowSet,filterResultList-method Man page
split,flowSet,list-method Man page
split,flowSet,numeric-method Man page
split-methods Man page
splitScaleTransform Man page Source code
splitscale Man page Source code
splitscale-class Man page
squareroot Man page Source code
squareroot-class Man page
string_to_spill Source code
subsetFilter Man page
subsetFilter-class Man page
subsetFilter-method Man page
summarizeFilter Man page
summarizeFilter,filterResult,filter-method Man page
summarizeFilter,filterResult,filterReference-method Man page
summarizeFilter,filterResult,parameterFilter-method Man page
summarizeFilter,filterResult,subsetFilter-method Man page
summarizeFilter,logicalFilterResult,norm2Filter-method Man page
summarizeFilter,logicalFilterResult,parameterFilter-method Man page
summarizeFilter,multipleFilterResult,parameterFilter-method Man page
summarizeFilter-methods Man page
summary,filter-method Man page
summary,filterReference-method Man page
summary,filterResult-method Man page
summary,filterResultList-method Man page
summary,flowFrame-method Man page
summary,flowSet-method Man page
summary,logicalFilterResult-method Man page
summary,manyFilterResult-method Man page
summary,multipleFilterResult-method Man page
summary,rectangleGate-method Man page
summary,subsetFilter-method Man page
summary,transform-method Man page
tail,flowFrame-method Man page
timeFilter Man page Source code
timeFilter-class Man page
toTable Man page
toTable,filterSummary-method Man page
toTable,filterSummaryList-method Man page
transform Man page
transform,flowFrame-method Man page
transform,flowSet-method Man page
transform,missing-method Man page
transform-class Man page
transformFilter Man page
transformFilter-class Man page
transformList Man page Source code
transformList-class Man page
transformMap Man page
transformMap-class Man page
transformReference Man page Source code
transformReference-class Man page
transform_gate Man page Source code
transform_gate.default Man page Source code
transformation Man page
transformation-class Man page
truncateTransform Man page Source code
txt2spillmatrix Source code
uint2double Source code
unionFilter Man page
unionFilter-class Man page
unitytransform Man page Source code
unitytransform-class Man page
updateTransformKeywords Man page Source code
update_channel_by_alias Source code
update_kw_from_pd Source code
validFilterList Source code
validFilterResultList Source code
validFilters Man page Source code
validFiltersList Source code
varLabels,flowSet-method Man page
varLabels<-,flowSet,ANY-method Man page
varLabels<-,flowSet-method Man page
varMetadata,flowSet-method Man page
varMetadata<-,flowSet,ANY-method Man page
write.AnnotatedDataFrame Source code
write.FCS Man page Source code
write.flowSet Man page Source code
writeFCSheader Source code
|,filter,filter-method Man page
|,filter,list-method Man page
|,list,filter-method Man page
RGLab/flowCore documentation built on March 19, 2024, 9:45 p.m.