Man pages for RGLab/ggcyto
Visualize Cytometry data with ggplot
| as.ggplot | It fortifies the data, fills some default settings and... |
| autoplot | Plot cytometry data in one or two dimension with the ggcyto... |
| axis_x_inverse_trans | Display ggcyto axis labels using their raw values (as stored... |
| compute_stats | compute the statistics of the cell population defined by... |
| faust_gating_plot | plot faust gating schemes |
| flowCore_asinht_trans | Inverse hyperbolic sine transformation(flowCore version). |
| fortify.ellipsoidGate | Convert a ellipsoidGate to a data.table useful for ggplot |
| fortify.filterList | Convert a filterList to a data.table useful for ggplot |
| fortify.flowSet | Convert a flowFrame/flowSet/GatingSet to a ggplot-compatible... |
| fortify_fs | Fortify a model into flowSet object |
| fortify.multiRangeGate | Convert a multiRangeGate to a data.table useful for ggplot |
| fortify.polygonGate | Convert a polygonGate to a data.table useful for ggplot |
| fortify.rectangleGate | Convert a rectangleGate to a data.table useful for ggplot |
| gate_null | clear all the geom_gate() layer previously added |
| geom_gate | Add a gate layer to a ggcyto plot. |
| geom_overlay | Overlay a population on an existing ggcyto plot analogous to... |
| geom_stats | Add a popluation statistics layer to a ggcyto plot. |
| getFlowFrame | extract flowFrame data structure from the given R object |
| ggcyto | Plot cytometry data using the ggcyto API |
| ggcyto_add | overloaded '+' method for ggcyto |
| ggcyto_arrange | Arrange a list of ggplot objects into gtable |
| ggcyto_par_default | Return The default ggcyto settings |
| ggcyto_par_set | Set some default parameters for ggcyto |
| is.ggcyto | Reports whether x is a ggcyto object |
| is.ggcyto_flowSet | Reports whether x is a ggcyto_flowSet object |
| is.ggcyto_par | Reports whether x is a ggcyto_par object |
| labs_cyto | Change axis labels and legend titles |
| marginalFilter | Generate a marginal gate. |
| merge.quad.gates | extend the original flowWorkspace:::.mergeGates function to... |
| print.ggcyto | Draw ggcyto on current graphics device. |
| print.ggcyto_GatingLayout | print method for ggcyto_gate_layout class |
| replace_data | replace current cytometry data |
| scales_flowjo_biexp | Add a flowJo biexponential scale to the x or y axes of a... |
| scales_flowjo_fasinh | Add a flowJo inverse hyperbolic sine scale to the x or y axes... |
| scale_x_flowCore_fasinh | Add a flowCore inverse hyperbolic sine scale to the x or y... |
| scale_x_logicle | Add a logicle scale to the x or y axes of a ggcyto plot. |
| stat_position | Compute the positions of the population statistics based on... |
| stats_null | clear all the geom_stats() layer previously added |
| transform-gate | rescale methods for gates |
