R/Boolean.R
In Ronggui/RQDA: Qualitative Data Analysis
Defines functions
notHelper
orHelper
andHelper
getCodingsByOne
Documented in
getCodingsByOne
getCodingsByOne <- function(cid, fid=NULL,codingTable=c("coding","coding2")){
if (length(cid)!=1) stop("cid should be length-1 integer vector.", domain = "R-RQDA")
codingTable <- match.arg(codingTable)
if (codingTable=="coding"){
ct <- RQDAQuery(sprintf("select coding.rowid as rowid, coding.cid, coding.fid, freecode.name as codename, source.name as filename, coding.selfirst as index1, coding.selend as index2, coding.seltext as coding, coding.selend - coding.selfirst as CodingLength from coding left join freecode on (coding.cid=freecode.id) left join source on (coding.fid=source.id) where coding.status=1 and source.status=1 and freecode.status=1 and coding.cid=%s",cid))
}
if (codingTable=="coding2"){
ct <- RQDAQuery(sprintf("select coding2.rowid as rowid, coding2.cid, coding2.fid, freecode.name as codename, source.name as filename, coding2.selfirst as index1, coding2.selend as index2, coding2.seltext as coding, coding2.selend - coding2.selfirst as CodingLength from coding2 left join freecode on (coding2.cid=freecode.id) left join source on (coding2.fid=source.id) where coding2.status=1 and source.status=1 and freecode.status=1 and coding2.cid=%s",cid))
}
if (nrow(ct) != 0) {
Encoding(ct$codename) <- Encoding(ct$filename) <- Encoding(ct$coding) <- "UTF-8"
if (!is.null(fid)) ct <- ct[ct$fid %in% fid,]
}
class(ct) <- c("codingsByOne","data.frame")
ct
}
print.codingsByOne <- function (x,...)
{
ComputeCallbackFun <- function(FileName,rowid){
CallBackFUN <- function(widget,event,...){
ViewFileFunHelper(FileName,hightlight=FALSE)
textView <- .rqda$.openfile_gui$widget
buffer <- textView$GetBuffer()
mark1 <- gtkTextBufferGetMark(buffer,sprintf("%s.1",rowid))
gtkTextViewScrollToMark(textView,mark1,0)
iter1 <- buffer$GetIterAtMark(mark1)$iter
idx1 <- gtkTextIterGetOffset(iter1)
mark2 <- buffer$GetMark(sprintf("%s.2", rowid))
gtkTextMarkSetVisible(mark2,TRUE)
iter2 <- buffer$GetIterAtMark(mark2)$iter
idx2 <- gtkTextIterGetOffset(iter2)
HL(.rqda$.openfile_gui, data.frame(idx1,idx2), fore.col = .rqda$fore.col, back.col = NULL)
}
CallBackFUN
}
if (nrow(x) == 0)
gmessage(gettext("No Codings.", domain = "R-RQDA"), container = TRUE)
else {
x <-x[order(x$fid,x$index1,x$index2),]
fid <- unique(x$fid)
Nfiles <- length(fid)
Ncodings <- nrow(x)
if(Ncodings == 1){
title <- sprintf(ngettext(Nfiles,
"1 coding from %i file",
"1 coding from %i files", domain = "R-RQDA"), Nfiles)
} else {
title <- sprintf(ngettext(Nfiles,
"%i codings from %i file",
"%i codings from %i files", domain = "R-RQDA"), Ncodings, Nfiles)
}
tryCatch(eval(parse(text = sprintf("dispose(.rqda$.codingsOf%s)",
"codingsByone"))), error = function(e) {
})
.gw <- gwindow(title = title, parent = getOption("widgetCoordinate"),
width = getOption("widgetSize")[1], height = getOption("widgetSize")[2])
mainIcon <- system.file("icon", "mainIcon.png", package = "RQDA")
.gw$widget$SetIconFromFile(mainIcon)
assign(sprintf(".codingsOf%s","codingsByone"), .gw, envir = .rqda)
.retreivalgui <- gtext(container = .gw)
font <- pangoFontDescriptionFromString(.rqda$font)
gtkWidgetModifyFont(.retreivalgui$widget,font)
.retreivalgui$widget$SetPixelsBelowLines(5)
.retreivalgui$widget$SetPixelsInsideWrap(5)
buffer <- .retreivalgui$widget$GetBuffer()
buffer$createTag("red", foreground = "red")
iter <- buffer$getIterAtOffset(0)$iter
apply(x, 1, function(x) {
metaData <- sprintf("%s [%i:%i]", x[["filename"]],as.numeric(x[["index1"]]), as.numeric(x[["index2"]]))
buffer$InsertWithTagsByName(iter, metaData, "red")
anchorcreated <- buffer$createChildAnchor(iter)
iter$BackwardChar()
anchor <- iter$getChildAnchor()
lab <- gtkLabelNew(gettext("Back", domain = "R-RQDA"))
widget <- gtkEventBoxNew()
widget$Add(lab)
gSignalConnect(widget, "button-press-event",
ComputeCallbackFun(x[["filename"]],as.numeric(x[["rowid"]])))
.retreivalgui$widget$addChildAtAnchor(widget, anchor)
widget$showAll()
iter$ForwardChar()
buffer$insert(iter, "\n")
buffer$InsertWithTagsByName(iter, x[["coding"]])
buffer$insert(iter, "\n\n")
})
buffer$PlaceCursor(buffer$getIterAtOffset(0)$iter)
}
}
andHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1],i[2]))))
daAll <- c(da11,da22)
ta <- table(daAll)
x <- sort(as.numeric(names(ta)[which(ta==2)]))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
and <- function (CT1, CT2)
### much faster than previous version of and()
### can extend to andSmart to handle more codes at the same time
{
ans <- data.frame()
fid <- unique(intersect(CT1$fid, CT2$fid))
if (length(fid) > 0) {
for (j in fid) {
tmp <- andHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]])
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
## add rowid so the summary method will work
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
orHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1],i[2]))))
daAll <- c(da11,da22)
x <- sort(unique(daAll))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
or <- function (CT1, CT2)
{
ans <- data.frame(stringsAsFactors=FALSE)
fid <- unique(union(CT1$fid, CT2$fid))
if (length(fid) > 0) {
for (j in fid) {
tmp <- orHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]],stringsAsFactors=FALSE)
tmp$filename[is.na(tmp$filename)] <- CT2$filename[which(CT2$fid==j)[1]]
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
## add rowid so the summary method will work
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
notHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1]+1,i[2]-1))))
daAll <- setdiff(da11,da22)
x <- sort(unique(daAll))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
not <- function (CT1, CT2)
{
ans <- data.frame(stringsAsFactors=FALSE)
fid <- unique(CT1$fid)
if (length(fid) > 0) {
for (j in fid) {
tmp <- notHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]],stringsAsFactors=FALSE)
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
"%and%.codingsByOne" <- function(e1,e2){
## and(e1, e2, showCoding=TRUE, method= getOption("andMethod"))
and(e1, e2)
}
"%or%.codingsByOne" <- function(e1,e2){
or(e1, e2)
}
"%not%.codingsByOne" <- function(e1,e2){
not(e1, e2)
}
## and_helper <- function(CT1,CT2,method){
## ## CT1 and CT2 is from GetCodingTable,each for one code and one file only
## ridx <- vector()
## idx <- vector()
## for (i in 1:nrow(CT1)) {
## for (j in 1:nrow(CT2)){
## rel <- relation(as.numeric(CT1[i,c("index1","index2")]),as.numeric(CT2[j,c("index1","index2")]))
## if (rel$Relation %in% method){
## ridx <- c(ridx,i,j)
## idx <- c(idx,rel$OverlapIndex)
## }
## }
## }
## if (length(ridx) >=2){
## rf <- ridx[seq(from=1,to=length(ridx),by=2)] ## row index for CT1
## rs <- ridx[seq(from=2,to=length(ridx),by=2)] ## row index for CT2
## index1 <- idx[seq(from=1,to=length(idx),by=2)]
## index2 <- idx[seq(from=2,to=length(idx),by=2)]
## ans <- cbind(CT1[rf,c("rowid","fid","filename")],index1=index1,index2=index2)
## ans
## }
## }
## and <- function(CT1,CT2,showCoding=TRUE, method= c("overlap","exact","inclusion")){
## ## CT1 and CT2 is from GetCodingTable,each for one code only
## fid <- intersect(CT1$fid,CT2$fid)
## if (length(fid)>0) {
## ans <- lapply(fid,FUN=function(x) {
## and_helper(CT1=subset(CT1,fid==x),CT2=subset(CT2,fid==x),method=method)
## }
## )
## ans <- do.call(rbind,ans)
## if (showCoding && !is.null(ans)){
## txt <- apply(ans,1,function(x){
## txt <- RQDAQuery(sprintf("select file from source where id==%s",x[["fid"]]))[1,1]
## Encoding(txt) <- "UTF-8"
## ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
## ans
## })
## ans$coding <- txt
## }
## }
## if ((length(fid)==0) || is.null(ans)){
## ans <- data.frame("rowid"=integer(0),"fid"=integer(0),
## "filename"=character(0), "index1"=integer(0),
## "index2"=integer(0), "coding"=character(0))
## }
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
## or <- function(CT1,CT2) {
## ## revised from mergeCodes() again.
## ## may use temp database table to do it.
## orHelperFUN <- function(From,Exist){ ## from and exist are data frame of codings.
## if (nrow(Exist)==0){## just write to the new code if there is no coding related to that code.
## ans <- From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## } else {
## Relations <- apply(Exist[c("index1","index2")],1,FUN=function(x) relation(x,c(From$index1,From$index2)))
## ## because apply convert data to an array, and Exist containts character -> x is charater rather than numeric
## Exist$Relation <- sapply(Relations,FUN=function(x) x$Relation) ## add Relation to the data frame as indicator.
## if (!any(Exist$Relation=="exact")) {
## ## if they are axact, do nothing;
## ## if they are not exact, do something. The following lines record meta info
## Exist$WhichMin <- sapply(Relations,FUN=function(x)x$WhichMin)
## Exist$Start <- sapply(Relations,FUN=function(x)x$UnionIndex[1])
## Exist$End <- sapply(Relations,FUN=function(x)x$UnionIndex[2])
## if (all(Exist$Relation=="proximity")){
## ## take care of proximity with distance of 0.
## ## (a not b) or (b) == a
## dis <- sapply(Relations,function(x) x$Distance)
## if (all(dis>0)) {
## ## if there are no overlap in any kind, the result is From+Exist
## ans <- rbind(From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE],
## Exist[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE])
## } else {
## idx0 <- which(dis==0)
## index3 <- unlist(c(From[,c("index1","index2")],Exist[idx0,c("index1","index2")]))
## From["coding"] <- paste(Exist$coding[idx0][rank(Exist$index1[idx0])],collapse="")
## From["index1"] <- min(index3)
## From["index2"] <- max(index3)
## ans <- rbind(From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE],
## Exist[which(dis>0),
## c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## )
## }
## ## end of handling proximity
## } else {
## ## if not proximate, pass to else branch.
## del1 <- (Exist$Relation =="inclusion" & any(Exist$WhichMin==2,Exist$WhichMax==2))
## ## ==2 -> take care of NA. Here 2 means From according to how Relations is returned.
## del2 <- Exist$Relation =="overlap"
## ## if overlap or inclusion [Exist nested in From] -> delete codings in Exist
## del <- (del1 | del2) ## index of rows in Exist that should be deleted.
## if (any(del)){
## ExistN <- Exist[-which(del),c("rowid","fid","filename","index1","index2","coding")]
## ## delete codings
## tt <- RQDAQuery(sprintf("select file from source where id=='%i'", From$fid))[1,1]
## Encoding(tt) <- "UTF-8" ## fulltext of the file
## Sel <- c(min(Exist$Start[del]), max(Exist$End[del])) ## index to get the new coding
## ans <- rbind(ExistN,
## data.frame(rowid=From$rowid,fid=From$fid,filename=From$filename,
## index1=Sel[1],index2=Sel[2],coding=substr(tt,Sel[1],Sel[2])
## )
## )
## }
## } ## end of handling overlapping and inclusion
## }
## }
## ans
## } ## end of helper function.
## if (any(c(nrow(CT1),nrow(CT2))==0)) stop("One code has empty coding.", domain = "R-RQDA")
## CT1 <- CT1[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## CT2 <- CT2[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## if (nrow(CT1) >= nrow(CT2)) {
## FromDat <- CT2
## ToDat <- CT1
## } else {
## FromDat <- CT1
## ToDat <- CT2
## }
## fidUnique <- unique(FromDat$fid)
## Nf <- length(fidUnique)
## ans <- vector("list",Nf+1)
## for (j in 1:Nf) {
## From <- FromDat[FromDat$fid==fidUnique[j],]
## for (i in seq_len(nrow(From))) {
## x <- From[i,,drop=FALSE]
## if (i==1) {
## Exist <- ToDat[ToDat$fid==fidUnique[j],]
## ## use original data only for the first
## }
## Exist <- orHelperFUN(From=x,Exist=Exist) ## use the result to update Exist
## }## end of i
## ans[[j]] <- Exist
## } ## and of j
## ans[[j+1]] <- ToDat[!ToDat$fid %in% fidUnique,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## ans <- do.call(rbind,ans)
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
## not_helper <- function(CT1,CT2){
## ## CT1 and CT2 is coings for one code and one file.
## ridx <- vector()
## idx <- vector()
## if (nrow(CT1)!=0) { ## if1
## if (nrow(CT2)==0) {
## ridx <- c(ridx,nrow(CT1))
## idx <- c(idx,unlist(as.data.frame(t(CT1[,c("index1","index2")]))))
## } else { ## else1
## for (i in 1:nrow(CT1)) {
## relAll <- apply(CT2,1,function(x)
## relation(CT1[i,c("index1","index2"),drop=TRUE],
## as.numeric(x[c("index1","index2")]))
## ) ## end of apply
## Relation <- sapply(relAll,function(x) x$Relation)
## if (all(Relation=="exact")) {
## ## do nothing
## } else { ## else2
## if (all(Relation=="proximity")){
## ridx <- c(ridx,i)
## idx <- c(idx, CT1[i,c("index1","index2"),drop=TRUE])
## } else { ## else3
## in.over <- Relation %in% c("inclusion", "overlap") ## index of overlap and inclusion
## rel.in.over <- relAll[in.over]
## nested <- sapply(rel.in.over,function(x){
## if (x$Relation=="inclusion") {
## ans <- (!is.na(x$WhichMin) && !is.na(x$WhichMax) &&
## x$WhichMin==2 && x$WhichMax==2)
## } else {
## ans <- FALSE
## }
## ans
## }
## ) ## end of sapply
## if (any(nested)) {
## ## do nothing
## } else {## else4
## over <- Relation %in% c("overlap")
## if (sum(over)>2) stop("the same text is coded twice by the same code.", domain = "R-RQDA")
## for (j in which(over)) {
## if (!is.na(relAll[[j]]$WhichMin) && relAll[[j]]$WhichMin==2){
## CT1[i,"index1"] <- relAll[[j]]$OverlapIndex[2]
## }
## if (!is.na(relAll[[j]]$WhichMin) && relAll[[j]]$WhichMin==1){
## CT1[i,"index2"] <- relAll[[j]]$OverlapIndex[1]
## }
## } ## end for j
## inidx<- Relation %in% c("inclusion")
## ans <- sapply(relAll[inidx],function(x) x$OverlapIndex)
## ans <- sort(unlist(c(CT1[i,c("index1","index2"),drop=TRUE],ans)))
## ridx <- c(ridx,rep(i,length(ans)/2))
## idx <- c(idx,ans)
## }## else4
## } ## else3
## } ## else 2
## } ## end of for i
## } ## end else1
## }## if1
## if (length(ridx) >=1){
## idx <- unlist(idx)
## index1 <- idx[seq(from=1,to=length(idx),by=2)]
## index2 <- idx[seq(from=2,to=length(idx),by=2)]
## ans <- cbind(CT1[ridx,c("rowid","fid","filename")],index1=index1,index2=index2)
## ## ans <- unique(ans)
## ans
## }
## }## end of fun
## not <- function(CT1,CT2,showCoding=FALSE){
## fid <- unique(CT1$fid)
## if (length(fid)>0) {
## ans <- lapply(fid,FUN=function(x) not_helper(CT1=subset(CT1,fid==x),CT2=subset(CT2,fid==x)))
## ans <- do.call(rbind,ans)
## if (showCoding && !is.null(ans)){
## txt <- apply(ans,1,function(x){
## txt <- RQDAQuery(sprintf("select file from source where id==%s",x[["fid"]]))[1,1]
## Encoding(txt) <- "UTF-8"
## ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
## ans
## })
## ans$coding <- txt
## }
## } else {
## ans <- data.frame("rowid"=integer(0),"fid"=integer(0),
## "filename"=character(0), "index1"=integer(0),
## "index2"=integer(0), "coding"=character(0))
## }
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
Ronggui/RQDA documentation built on Nov. 22, 2021, 12:21 a.m.
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Defines functions notHelper orHelper andHelper getCodingsByOne
Documented in getCodingsByOne
getCodingsByOne <- function(cid, fid=NULL,codingTable=c("coding","coding2")){
if (length(cid)!=1) stop("cid should be length-1 integer vector.", domain = "R-RQDA")
codingTable <- match.arg(codingTable)
if (codingTable=="coding"){
ct <- RQDAQuery(sprintf("select coding.rowid as rowid, coding.cid, coding.fid, freecode.name as codename, source.name as filename, coding.selfirst as index1, coding.selend as index2, coding.seltext as coding, coding.selend - coding.selfirst as CodingLength from coding left join freecode on (coding.cid=freecode.id) left join source on (coding.fid=source.id) where coding.status=1 and source.status=1 and freecode.status=1 and coding.cid=%s",cid))
}
if (codingTable=="coding2"){
ct <- RQDAQuery(sprintf("select coding2.rowid as rowid, coding2.cid, coding2.fid, freecode.name as codename, source.name as filename, coding2.selfirst as index1, coding2.selend as index2, coding2.seltext as coding, coding2.selend - coding2.selfirst as CodingLength from coding2 left join freecode on (coding2.cid=freecode.id) left join source on (coding2.fid=source.id) where coding2.status=1 and source.status=1 and freecode.status=1 and coding2.cid=%s",cid))
}
if (nrow(ct) != 0) {
Encoding(ct$codename) <- Encoding(ct$filename) <- Encoding(ct$coding) <- "UTF-8"
if (!is.null(fid)) ct <- ct[ct$fid %in% fid,]
}
class(ct) <- c("codingsByOne","data.frame")
ct
}
print.codingsByOne <- function (x,...)
{
ComputeCallbackFun <- function(FileName,rowid){
CallBackFUN <- function(widget,event,...){
ViewFileFunHelper(FileName,hightlight=FALSE)
textView <- .rqda$.openfile_gui$widget
buffer <- textView$GetBuffer()
mark1 <- gtkTextBufferGetMark(buffer,sprintf("%s.1",rowid))
gtkTextViewScrollToMark(textView,mark1,0)
iter1 <- buffer$GetIterAtMark(mark1)$iter
idx1 <- gtkTextIterGetOffset(iter1)
mark2 <- buffer$GetMark(sprintf("%s.2", rowid))
gtkTextMarkSetVisible(mark2,TRUE)
iter2 <- buffer$GetIterAtMark(mark2)$iter
idx2 <- gtkTextIterGetOffset(iter2)
HL(.rqda$.openfile_gui, data.frame(idx1,idx2), fore.col = .rqda$fore.col, back.col = NULL)
}
CallBackFUN
}
if (nrow(x) == 0)
gmessage(gettext("No Codings.", domain = "R-RQDA"), container = TRUE)
else {
x <-x[order(x$fid,x$index1,x$index2),]
fid <- unique(x$fid)
Nfiles <- length(fid)
Ncodings <- nrow(x)
if(Ncodings == 1){
title <- sprintf(ngettext(Nfiles,
"1 coding from %i file",
"1 coding from %i files", domain = "R-RQDA"), Nfiles)
} else {
title <- sprintf(ngettext(Nfiles,
"%i codings from %i file",
"%i codings from %i files", domain = "R-RQDA"), Ncodings, Nfiles)
}
tryCatch(eval(parse(text = sprintf("dispose(.rqda$.codingsOf%s)",
"codingsByone"))), error = function(e) {
})
.gw <- gwindow(title = title, parent = getOption("widgetCoordinate"),
width = getOption("widgetSize")[1], height = getOption("widgetSize")[2])
mainIcon <- system.file("icon", "mainIcon.png", package = "RQDA")
.gw$widget$SetIconFromFile(mainIcon)
assign(sprintf(".codingsOf%s","codingsByone"), .gw, envir = .rqda)
.retreivalgui <- gtext(container = .gw)
font <- pangoFontDescriptionFromString(.rqda$font)
gtkWidgetModifyFont(.retreivalgui$widget,font)
.retreivalgui$widget$SetPixelsBelowLines(5)
.retreivalgui$widget$SetPixelsInsideWrap(5)
buffer <- .retreivalgui$widget$GetBuffer()
buffer$createTag("red", foreground = "red")
iter <- buffer$getIterAtOffset(0)$iter
apply(x, 1, function(x) {
metaData <- sprintf("%s [%i:%i]", x[["filename"]],as.numeric(x[["index1"]]), as.numeric(x[["index2"]]))
buffer$InsertWithTagsByName(iter, metaData, "red")
anchorcreated <- buffer$createChildAnchor(iter)
iter$BackwardChar()
anchor <- iter$getChildAnchor()
lab <- gtkLabelNew(gettext("Back", domain = "R-RQDA"))
widget <- gtkEventBoxNew()
widget$Add(lab)
gSignalConnect(widget, "button-press-event",
ComputeCallbackFun(x[["filename"]],as.numeric(x[["rowid"]])))
.retreivalgui$widget$addChildAtAnchor(widget, anchor)
widget$showAll()
iter$ForwardChar()
buffer$insert(iter, "\n")
buffer$InsertWithTagsByName(iter, x[["coding"]])
buffer$insert(iter, "\n\n")
})
buffer$PlaceCursor(buffer$getIterAtOffset(0)$iter)
}
}
andHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1],i[2]))))
daAll <- c(da11,da22)
ta <- table(daAll)
x <- sort(as.numeric(names(ta)[which(ta==2)]))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
and <- function (CT1, CT2)
### much faster than previous version of and()
### can extend to andSmart to handle more codes at the same time
{
ans <- data.frame()
fid <- unique(intersect(CT1$fid, CT2$fid))
if (length(fid) > 0) {
for (j in fid) {
tmp <- andHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]])
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
## add rowid so the summary method will work
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
orHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1],i[2]))))
daAll <- c(da11,da22)
x <- sort(unique(daAll))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
or <- function (CT1, CT2)
{
ans <- data.frame(stringsAsFactors=FALSE)
fid <- unique(union(CT1$fid, CT2$fid))
if (length(fid) > 0) {
for (j in fid) {
tmp <- orHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]],stringsAsFactors=FALSE)
tmp$filename[is.na(tmp$filename)] <- CT2$filename[which(CT2$fid==j)[1]]
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
## add rowid so the summary method will work
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
notHelper <- function(d1,d2){
da11 <- sort(unlist(apply(d1,1,function(i)seq(i[1],i[2]))))
da22 <- sort(unlist(apply(d2,1,function(i)seq(i[1]+1,i[2]-1))))
daAll <- setdiff(da11,da22)
x <- sort(unique(daAll))
vnl <- rle(diff(x))
idx2 <- 1+cumsum(vnl$lengths)[which(vnl$value==1)]
len <- 1+vnl$lengths[which(vnl$value==1)]
idx1 <- idx2 - len + 1
x1 <- x[idx1]
x2 <- x[idx2]
ans <- data.frame(index1=x1, index2=x2)
ans
}
not <- function (CT1, CT2)
{
ans <- data.frame(stringsAsFactors=FALSE)
fid <- unique(CT1$fid)
if (length(fid) > 0) {
for (j in fid) {
tmp <- notHelper(subset(CT1, fid == j, c("index1","index2")),
subset(CT2, fid == j, c("index1","index2"))
)
if (nrow(tmp)>0) {
tmp <- cbind(tmp,fid=j, filename=CT1$filename[which(CT1$fid==j)[1]],stringsAsFactors=FALSE)
rid1 <- match(tmp$index1,CT1$index1)
rid1NA <- is.na(rid1)
tmp$rowid[!rid1NA] <- CT1$rowid[rid1[!rid1NA]]
rid2 <- match(tmp$index1[rid1NA],CT2$index1)
tmp$rowid[rid1NA] <- CT2$rowid[rid2]
ans <- rbind(ans,tmp)
}
}
if (nrow(ans) != 0){
txt <- apply(ans,1,function(x){
txt <- RQDAQuery(sprintf("select file from source where id=%s",x[["fid"]]))[1,1]
Encoding(txt) <- "UTF-8"
ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
ans
})
ans$coding <- txt
}
}
class(ans) <- c("codingsByOne", "data.frame")
ans
}
"%and%.codingsByOne" <- function(e1,e2){
## and(e1, e2, showCoding=TRUE, method= getOption("andMethod"))
and(e1, e2)
}
"%or%.codingsByOne" <- function(e1,e2){
or(e1, e2)
}
"%not%.codingsByOne" <- function(e1,e2){
not(e1, e2)
}
## and_helper <- function(CT1,CT2,method){
## ## CT1 and CT2 is from GetCodingTable,each for one code and one file only
## ridx <- vector()
## idx <- vector()
## for (i in 1:nrow(CT1)) {
## for (j in 1:nrow(CT2)){
## rel <- relation(as.numeric(CT1[i,c("index1","index2")]),as.numeric(CT2[j,c("index1","index2")]))
## if (rel$Relation %in% method){
## ridx <- c(ridx,i,j)
## idx <- c(idx,rel$OverlapIndex)
## }
## }
## }
## if (length(ridx) >=2){
## rf <- ridx[seq(from=1,to=length(ridx),by=2)] ## row index for CT1
## rs <- ridx[seq(from=2,to=length(ridx),by=2)] ## row index for CT2
## index1 <- idx[seq(from=1,to=length(idx),by=2)]
## index2 <- idx[seq(from=2,to=length(idx),by=2)]
## ans <- cbind(CT1[rf,c("rowid","fid","filename")],index1=index1,index2=index2)
## ans
## }
## }
## and <- function(CT1,CT2,showCoding=TRUE, method= c("overlap","exact","inclusion")){
## ## CT1 and CT2 is from GetCodingTable,each for one code only
## fid <- intersect(CT1$fid,CT2$fid)
## if (length(fid)>0) {
## ans <- lapply(fid,FUN=function(x) {
## and_helper(CT1=subset(CT1,fid==x),CT2=subset(CT2,fid==x),method=method)
## }
## )
## ans <- do.call(rbind,ans)
## if (showCoding && !is.null(ans)){
## txt <- apply(ans,1,function(x){
## txt <- RQDAQuery(sprintf("select file from source where id==%s",x[["fid"]]))[1,1]
## Encoding(txt) <- "UTF-8"
## ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
## ans
## })
## ans$coding <- txt
## }
## }
## if ((length(fid)==0) || is.null(ans)){
## ans <- data.frame("rowid"=integer(0),"fid"=integer(0),
## "filename"=character(0), "index1"=integer(0),
## "index2"=integer(0), "coding"=character(0))
## }
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
## or <- function(CT1,CT2) {
## ## revised from mergeCodes() again.
## ## may use temp database table to do it.
## orHelperFUN <- function(From,Exist){ ## from and exist are data frame of codings.
## if (nrow(Exist)==0){## just write to the new code if there is no coding related to that code.
## ans <- From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## } else {
## Relations <- apply(Exist[c("index1","index2")],1,FUN=function(x) relation(x,c(From$index1,From$index2)))
## ## because apply convert data to an array, and Exist containts character -> x is charater rather than numeric
## Exist$Relation <- sapply(Relations,FUN=function(x) x$Relation) ## add Relation to the data frame as indicator.
## if (!any(Exist$Relation=="exact")) {
## ## if they are axact, do nothing;
## ## if they are not exact, do something. The following lines record meta info
## Exist$WhichMin <- sapply(Relations,FUN=function(x)x$WhichMin)
## Exist$Start <- sapply(Relations,FUN=function(x)x$UnionIndex[1])
## Exist$End <- sapply(Relations,FUN=function(x)x$UnionIndex[2])
## if (all(Exist$Relation=="proximity")){
## ## take care of proximity with distance of 0.
## ## (a not b) or (b) == a
## dis <- sapply(Relations,function(x) x$Distance)
## if (all(dis>0)) {
## ## if there are no overlap in any kind, the result is From+Exist
## ans <- rbind(From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE],
## Exist[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE])
## } else {
## idx0 <- which(dis==0)
## index3 <- unlist(c(From[,c("index1","index2")],Exist[idx0,c("index1","index2")]))
## From["coding"] <- paste(Exist$coding[idx0][rank(Exist$index1[idx0])],collapse="")
## From["index1"] <- min(index3)
## From["index2"] <- max(index3)
## ans <- rbind(From[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE],
## Exist[which(dis>0),
## c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## )
## }
## ## end of handling proximity
## } else {
## ## if not proximate, pass to else branch.
## del1 <- (Exist$Relation =="inclusion" & any(Exist$WhichMin==2,Exist$WhichMax==2))
## ## ==2 -> take care of NA. Here 2 means From according to how Relations is returned.
## del2 <- Exist$Relation =="overlap"
## ## if overlap or inclusion [Exist nested in From] -> delete codings in Exist
## del <- (del1 | del2) ## index of rows in Exist that should be deleted.
## if (any(del)){
## ExistN <- Exist[-which(del),c("rowid","fid","filename","index1","index2","coding")]
## ## delete codings
## tt <- RQDAQuery(sprintf("select file from source where id=='%i'", From$fid))[1,1]
## Encoding(tt) <- "UTF-8" ## fulltext of the file
## Sel <- c(min(Exist$Start[del]), max(Exist$End[del])) ## index to get the new coding
## ans <- rbind(ExistN,
## data.frame(rowid=From$rowid,fid=From$fid,filename=From$filename,
## index1=Sel[1],index2=Sel[2],coding=substr(tt,Sel[1],Sel[2])
## )
## )
## }
## } ## end of handling overlapping and inclusion
## }
## }
## ans
## } ## end of helper function.
## if (any(c(nrow(CT1),nrow(CT2))==0)) stop("One code has empty coding.", domain = "R-RQDA")
## CT1 <- CT1[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## CT2 <- CT2[,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## if (nrow(CT1) >= nrow(CT2)) {
## FromDat <- CT2
## ToDat <- CT1
## } else {
## FromDat <- CT1
## ToDat <- CT2
## }
## fidUnique <- unique(FromDat$fid)
## Nf <- length(fidUnique)
## ans <- vector("list",Nf+1)
## for (j in 1:Nf) {
## From <- FromDat[FromDat$fid==fidUnique[j],]
## for (i in seq_len(nrow(From))) {
## x <- From[i,,drop=FALSE]
## if (i==1) {
## Exist <- ToDat[ToDat$fid==fidUnique[j],]
## ## use original data only for the first
## }
## Exist <- orHelperFUN(From=x,Exist=Exist) ## use the result to update Exist
## }## end of i
## ans[[j]] <- Exist
## } ## and of j
## ans[[j+1]] <- ToDat[!ToDat$fid %in% fidUnique,c("rowid","fid","filename","index1","index2","coding"),drop=FALSE]
## ans <- do.call(rbind,ans)
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
## not_helper <- function(CT1,CT2){
## ## CT1 and CT2 is coings for one code and one file.
## ridx <- vector()
## idx <- vector()
## if (nrow(CT1)!=0) { ## if1
## if (nrow(CT2)==0) {
## ridx <- c(ridx,nrow(CT1))
## idx <- c(idx,unlist(as.data.frame(t(CT1[,c("index1","index2")]))))
## } else { ## else1
## for (i in 1:nrow(CT1)) {
## relAll <- apply(CT2,1,function(x)
## relation(CT1[i,c("index1","index2"),drop=TRUE],
## as.numeric(x[c("index1","index2")]))
## ) ## end of apply
## Relation <- sapply(relAll,function(x) x$Relation)
## if (all(Relation=="exact")) {
## ## do nothing
## } else { ## else2
## if (all(Relation=="proximity")){
## ridx <- c(ridx,i)
## idx <- c(idx, CT1[i,c("index1","index2"),drop=TRUE])
## } else { ## else3
## in.over <- Relation %in% c("inclusion", "overlap") ## index of overlap and inclusion
## rel.in.over <- relAll[in.over]
## nested <- sapply(rel.in.over,function(x){
## if (x$Relation=="inclusion") {
## ans <- (!is.na(x$WhichMin) && !is.na(x$WhichMax) &&
## x$WhichMin==2 && x$WhichMax==2)
## } else {
## ans <- FALSE
## }
## ans
## }
## ) ## end of sapply
## if (any(nested)) {
## ## do nothing
## } else {## else4
## over <- Relation %in% c("overlap")
## if (sum(over)>2) stop("the same text is coded twice by the same code.", domain = "R-RQDA")
## for (j in which(over)) {
## if (!is.na(relAll[[j]]$WhichMin) && relAll[[j]]$WhichMin==2){
## CT1[i,"index1"] <- relAll[[j]]$OverlapIndex[2]
## }
## if (!is.na(relAll[[j]]$WhichMin) && relAll[[j]]$WhichMin==1){
## CT1[i,"index2"] <- relAll[[j]]$OverlapIndex[1]
## }
## } ## end for j
## inidx<- Relation %in% c("inclusion")
## ans <- sapply(relAll[inidx],function(x) x$OverlapIndex)
## ans <- sort(unlist(c(CT1[i,c("index1","index2"),drop=TRUE],ans)))
## ridx <- c(ridx,rep(i,length(ans)/2))
## idx <- c(idx,ans)
## }## else4
## } ## else3
## } ## else 2
## } ## end of for i
## } ## end else1
## }## if1
## if (length(ridx) >=1){
## idx <- unlist(idx)
## index1 <- idx[seq(from=1,to=length(idx),by=2)]
## index2 <- idx[seq(from=2,to=length(idx),by=2)]
## ans <- cbind(CT1[ridx,c("rowid","fid","filename")],index1=index1,index2=index2)
## ## ans <- unique(ans)
## ans
## }
## }## end of fun
## not <- function(CT1,CT2,showCoding=FALSE){
## fid <- unique(CT1$fid)
## if (length(fid)>0) {
## ans <- lapply(fid,FUN=function(x) not_helper(CT1=subset(CT1,fid==x),CT2=subset(CT2,fid==x)))
## ans <- do.call(rbind,ans)
## if (showCoding && !is.null(ans)){
## txt <- apply(ans,1,function(x){
## txt <- RQDAQuery(sprintf("select file from source where id==%s",x[["fid"]]))[1,1]
## Encoding(txt) <- "UTF-8"
## ans <- substr(txt, as.numeric(x[["index1"]])+1, as.numeric(x[["index2"]]))
## ans
## })
## ans$coding <- txt
## }
## } else {
## ans <- data.frame("rowid"=integer(0),"fid"=integer(0),
## "filename"=character(0), "index1"=integer(0),
## "index2"=integer(0), "coding"=character(0))
## }
## class(ans) <- c("codingsByOne","data.frame")
## ans
## }
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