data-raw/equations_Smal1993.R
In SCAR/solong: Allometric Equations for Southern Ocean Taxa
##oldrefs$Smal1993 <- "Smale MJ, Clarke MR, Klages TW, Roeleveld MA (1993) Octopod beak identification: resolution at a regional level (Cephalopoda, Octopoda: Southern Africa). South African Journal of Marine Sciences 13: 269-293"
refs$Smal1993 <- bibentry(bibtype="Article",key="Smal1993",
author=c(person(c("M","J"),"Smale"),person(c("M","R"),"Clarke"),person(c("T","W"),"Klages"),person(c("M","A"),"Roeleveld")),
year=1993,title="Octopod beak identification: resolution at a regional level (Cephalopoda, Octopoda: Southern Africa)",
journal="South African Journal of Marine Sciences",
volume=13,pages="269-293")
alleq_Smal1993 <- function(id) {
switch(id,
## Octopus vulgaris
"140605_ML_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=-10.3825+10.5903*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.0,sample_maximum=18.5),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",60,
"R^2",0.87),
reference=refs$Smal1993),
"140605_HL_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=1.1153+0.3261*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.2,sample_maximum=16.6),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",7,
"R^2",0.87),
reference=refs$Smal1993),
"140605_WW_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=exp(1.1756+0.1263*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.0,sample_maximum=18.5),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",56,
"R^2",0.91),
reference=refs$Smal1993),
## Octopus magnificus 225568, valid name is Enteroctopus magnificus 535784
"225568_ML_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=12.4764+9.1742*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",26,
"R^2",0.89),
reference=refs$Smal1993),
"225568_HL_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=-0.2624+0.4309*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",30,
"R^2",0.96),
reference=refs$Smal1993),
"225568_WW_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=exp(1.1761+0.0940*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",23,
"R^2",0.89),
reference=refs$Smal1993),
## Velodona togata
"342415_ML_Smal1993"=list(taxon_name="Velodona togata",
taxon_aphia_id=342415,
equation=function(...)tibble(allometric_value=-12.2509+7.2872*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.6,sample_maximum=20.2),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",18,
"R^2",0.87),
reference=refs$Smal1993),
"342415_HL_Smal1993"=list(taxon_name="Velodona togata",
taxon_aphia_id=342415,
equation=function(...)tibble(allometric_value=-0.3936+0.4854*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.6,sample_maximum=20.2),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",22,
"R^2",0.94),
reference=refs$Smal1993),
## Bathypolypus valdiviae
"341910_ML_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=-16.4188+8.0651*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",24,
"R^2",0.61),
reference=refs$Smal1993),
"341910_HL_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=-0.3457+0.4379*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",25,
"R^2",0.79),
reference=refs$Smal1993),
"341910_WW_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=exp(0.1398+0.1866*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",18,
"R^2",0.87),
reference=refs$Smal1993),
## Opisthoteuthis
"138294_ML_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=-26.0047+12.4858*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=9.2),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",13,
"R^2",0.89),
reference=refs$Smal1993),
"138294_HL_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=-0.3360+0.5619*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=13.0),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",16,
"R^2",0.94),
reference=refs$Smal1993),
"138294_WW_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=exp(0.5893+0.2413*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=9.2),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",9,
"R^2",0.82),
reference=refs$Smal1993),
## Tremoctopus violaceus 141694
"141694_ML_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=-46.7764+18.2608*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=16.1),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",9,
"R^2",0.94),
reference=refs$Smal1993),
"141694_HL_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=-1.4336+0.7930*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=18.6),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",13,
"R^2",0.94),
reference=refs$Smal1993),
"141694_WW_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=exp(0.5318+0.1951*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=16.3),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",11,
"R^2",0.88),
reference=refs$Smal1993),
## Argonauta spp. 137676
"137676_ML_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=-1.1670+6.2816*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",20,
"R^2",0.78),
reference=refs$Smal1993),
"137676_HL_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=-0.1450+0.5033*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",21,
"R^2",0.95),
reference=refs$Smal1993),
"137676_WW_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=exp(-0.1110+0.1502*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",17,
"R^2",0.87),
reference=refs$Smal1993),
stop("unrecognized equation ID: ",id))
}
SCAR/solong documentation built on Aug. 5, 2022, 9:04 p.m.
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##oldrefs$Smal1993 <- "Smale MJ, Clarke MR, Klages TW, Roeleveld MA (1993) Octopod beak identification: resolution at a regional level (Cephalopoda, Octopoda: Southern Africa). South African Journal of Marine Sciences 13: 269-293"
refs$Smal1993 <- bibentry(bibtype="Article",key="Smal1993",
author=c(person(c("M","J"),"Smale"),person(c("M","R"),"Clarke"),person(c("T","W"),"Klages"),person(c("M","A"),"Roeleveld")),
year=1993,title="Octopod beak identification: resolution at a regional level (Cephalopoda, Octopoda: Southern Africa)",
journal="South African Journal of Marine Sciences",
volume=13,pages="269-293")
alleq_Smal1993 <- function(id) {
switch(id,
## Octopus vulgaris
"140605_ML_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=-10.3825+10.5903*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.0,sample_maximum=18.5),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",60,
"R^2",0.87),
reference=refs$Smal1993),
"140605_HL_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=1.1153+0.3261*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.2,sample_maximum=16.6),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",7,
"R^2",0.87),
reference=refs$Smal1993),
"140605_WW_Smal1993"=list(taxon_name="Octopus vulgaris",
taxon_aphia_id=140605,
equation=function(...)tibble(allometric_value=exp(1.1756+0.1263*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.0,sample_maximum=18.5),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",56,
"R^2",0.91),
reference=refs$Smal1993),
## Octopus magnificus 225568, valid name is Enteroctopus magnificus 535784
"225568_ML_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=12.4764+9.1742*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",26,
"R^2",0.89),
reference=refs$Smal1993),
"225568_HL_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=-0.2624+0.4309*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",30,
"R^2",0.96),
reference=refs$Smal1993),
"225568_WW_Smal1993"=list(taxon_name="Octopus magnificus",
taxon_aphia_id=225568,
equation=function(...)tibble(allometric_value=exp(1.1761+0.0940*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.2,sample_maximum=29.9),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",23,
"R^2",0.89),
reference=refs$Smal1993),
## Velodona togata
"342415_ML_Smal1993"=list(taxon_name="Velodona togata",
taxon_aphia_id=342415,
equation=function(...)tibble(allometric_value=-12.2509+7.2872*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.6,sample_maximum=20.2),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",18,
"R^2",0.87),
reference=refs$Smal1993),
"342415_HL_Smal1993"=list(taxon_name="Velodona togata",
taxon_aphia_id=342415,
equation=function(...)tibble(allometric_value=-0.3936+0.4854*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=7.6,sample_maximum=20.2),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",22,
"R^2",0.94),
reference=refs$Smal1993),
## Bathypolypus valdiviae
"341910_ML_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=-16.4188+8.0651*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",24,
"R^2",0.61),
reference=refs$Smal1993),
"341910_HL_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=-0.3457+0.4379*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",25,
"R^2",0.79),
reference=refs$Smal1993),
"341910_WW_Smal1993"=list(taxon_name="Bathypolypus valdiviae",
taxon_aphia_id=341910,
equation=function(...)tibble(allometric_value=exp(0.1398+0.1866*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=5.7,sample_maximum=9.5),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",18,
"R^2",0.87),
reference=refs$Smal1993),
## Opisthoteuthis
"138294_ML_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=-26.0047+12.4858*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=9.2),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",13,
"R^2",0.89),
reference=refs$Smal1993),
"138294_HL_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=-0.3360+0.5619*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=13.0),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",16,
"R^2",0.94),
reference=refs$Smal1993),
"138294_WW_Smal1993"=list(taxon_name="Opisthoteuthis",
taxon_aphia_id=138294,
equation=function(...)tibble(allometric_value=exp(0.5893+0.2413*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.2,sample_maximum=9.2),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",9,
"R^2",0.82),
reference=refs$Smal1993),
## Tremoctopus violaceus 141694
"141694_ML_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=-46.7764+18.2608*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=16.1),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",9,
"R^2",0.94),
reference=refs$Smal1993),
"141694_HL_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=-1.4336+0.7930*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=18.6),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",13,
"R^2",0.94),
reference=refs$Smal1993),
"141694_WW_Smal1993"=list(taxon_name="Tremoctopus violaceus",
taxon_aphia_id=141694,
equation=function(...)tibble(allometric_value=exp(0.5318+0.1951*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=4.6,sample_maximum=16.3),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",11,
"R^2",0.88),
reference=refs$Smal1993),
## Argonauta spp. 137676
"137676_ML_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=-1.1670+6.2816*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="mantle length",
return_units="mm",
reliability=tribble(~type,~value,
"N",20,
"R^2",0.78),
reference=refs$Smal1993),
"137676_HL_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=-0.1450+0.5033*...),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="hood length",
return_units="mm",
reliability=tribble(~type,~value,
"N",21,
"R^2",0.95),
reference=refs$Smal1993),
"137676_WW_Smal1993"=list(taxon_name="Argonauta",
taxon_aphia_id=137676,
equation=function(...)tibble(allometric_value=exp(-0.1110+0.1502*...)),
inputs=tibble(property="crest length",units="mm",sample_minimum=3.5,sample_maximum=19.3),
return_property="wet weight",
return_units="g",
reliability=tribble(~type,~value,
"N",17,
"R^2",0.87),
reference=refs$Smal1993),
stop("unrecognized equation ID: ",id))
}
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