asci-class: An S4 class to represent an 'asci' object

Description Usage Arguments Slots Examples

Description

The S4 asci object includes several methods shown below.

Usage

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## S4 method for signature 'asci'
show(object)

scores(object)

## S4 method for signature 'asci'
scores(object)

Supp1_mmi(object)

## S4 method for signature 'asci'
Supp1_mmi(object)

Supp1_OE(object)

## S4 method for signature 'asci'
Supp1_OE(object)

Supp2_OE(object)

## S4 method for signature 'asci'
Supp2_OE(object)

Arguments

object

asci object created with ASCI

Slots

scores

data.frame of ASCI scores

Supp1_mmi

data.frame of supplemental MMI metric scores

Supp1_OE

data.frame of supplemental taxonomic capture probabilities for OE

Supp2_OE

data.frame of supplemental group capture probabilities for OE

null_OE

data.frame of null OE scores

taxa

character string of taxa returned with initial function call

Examples

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results <- ASCI(demo_algae_tax, demo_algae_sitedata)
scores(results)
Supp1_mmi(results)
Supp1_OE(results)
Supp2_OE(results)

SCCWRP/ASCI documentation built on Jan. 12, 2018, 6:33 p.m.