causal_stat: Granger-Causal Test Statistic
In SMAC-Group/irg: Granger-Causal Tests for Irregularly Sampled Signals

Description Usage Arguments Value Author(s)

View source: R/granger_tests.R

This function is used within the granger_test function to compute the Granger-Causal test statistic on the signals of interest as well as on the simulated ones based on the sim_proc function (see Heerah et al., 2020).

1	causal_stat(root, shoot, times, theta, alternative = "twodir")

`root`	A `double` value of the vector containing the detrended and standardized measurements of the first signal (the root expressions).
`shoot`	A `double` value of the vector containing the detrended and standardized measurements of the second signal (the shoot expressions).
`times`	A `double` value of the vector collecting the times (measured in the same unit) at which the measurements were taken for both signals (`root` and `shoot`).
`theta`	A `double` value for the starting values of the parameter vector theta of the full causal model (must be of length 8).
`alternative`	A `character` value defining the alternative hypothesis for the Granger-Causal test (with the null hypothesis always being "the signals do not Granger-cause each other"). The default value is `"twodir"` which tests the alternative that "both signals Granger-cause each other". The other options are `"rtos"` which tests the alternative "the first signal (root) Granger-causes the second signal (shoot)" and `"stor"` which tests the alternative "the second signal (shoot) Granger-causes the first signal (root)".

A list containing the following objects:

stat: The value of the Granger-Causal test statistic for the specified alternative hypothesis HA
parameters: A double vector containing the values of the parameters relevant for the specified alternative hypothesis HA (i.e. intensity of the causal impact (psi) and the time of maximal impact (gamma))

Roberto Molinari and Stephane Guerrier

SMAC-Group/irg documentation built on Sept. 9, 2021, 7:16 p.m.