export2SBMLqual: Export a network to SBML qual format.

Description Usage Arguments Details References Examples

Description

Exports a network saved in a text file to SBML qual format.

Usage

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export2SBMLqual(inputfile=NULL,Lines=NULL,file="output.sbml")

Arguments

inputfile

The name of the input text file from which the Boolean expressions must be converted.

Lines

The name of the character input vector from which the Boolean expressions must be converted.

file

The name of the SBML file to be created

Details

The function creates an SBML file describing the logical model that corresponds to the Boolean network saved as a text file or in a character vector obtained after reading the text file. Temporal operators are not allowed, as they are not compatible with SBML qual.

References

http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/Qualitative_Models_(qual)

Examples

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#Load the example network:
 data("Example_network")
#Export the Boolean functions to a sbml file: 
 export2SBMLqual(Lines=BN$BooleanFunctions,file="example_network.sbml")

SPIDDOR/SPIDDOR documentation built on May 9, 2019, 11:42 a.m.