read.cellcollective: Load a Boolean network from The Cell Collective repository
In SPIDDOR/SPIDDOR: SPIDDOR

Description Usage Arguments Value References See Also Examples

Loads a Boolean expressions file from The Cell Collective repository.

1	read.cellcollective(file,txt.output=NULL,language="C")

`file`	The Cell Collective file to be read
`txt.output`	Optional argument to specify the name of an additional text file where the Boolean expressions from the repository will be saved but using the SPIDDOR nomenclature.
`language`	The name of the programming language ("R" or "C") where the simulation algorithm will be coded. Defaults is C++ language

Returns a list with the most important information of the network.

https://www.thecellcollective.org/

See Also read.Boolean.functions

#Write the Lac operon network that can be downloaded from The Cell Collective:
sink("CellCollective_file.txt")
cat("allolactose = ( enviro_lactose )\n") 
cat("lac_enzymes = ( lac_mRNA )\n")  
cat("lac_operon = ( ( ( CAP  ) AND NOT ( CAP_mutation  )  ) AND NOT ( lac_repressor  ) )\n")  
cat("lac_repressor =  NOT ( ( allolactose ) )\n") 
cat("CAP = ( cAMP )\n")  
cat("lactose_breakdown = ( ( lac_enzymes  ) AND NOT ( lacZ_mutation  ) )\n")  
cat("cAMP =  NOT ( ( enviro_glucose ) )\n") 
cat("lac_mRNA = ( lac_operon )\n") 
sink()

#Load the network saved in the file:
 BN<-read.cellcollective(file="CellCollective_file.txt")

 print(BN$nodes.names)