Files in SachaEpskamp/psychonetrics

Structural Equation Modeling and Confirmatory Network Analysis

.Rbuildignore

DESCRIPTION

NAMESPACE

NEWS

R/00_codeOrganization.R R/00_steps_to_implement_distribution.R R/00_steps_to_implement_estimator.R R/00_steps_to_implement_model.R R/01_classes.R R/02_algebrahelpers_Solve.R R/02_algebrahelpers_blockToeplitz.R R/02_algebrahelpers_checkJacobian.R R/02_algebrahelpers_expected_latent_residual_covs.R R/02_algebrahelpers_expectedmodel.R R/02_algebrahelpers_kronecker.R R/02_algebrahelpers_lavUtils.R R/02_algebrahelpers_matrixexponent.R R/02_algebrahelpers_maxcor.R R/02_algebrahelpers_modelMatrix.R R/02_algebrahelpers_quantiletransform.R R/02_algebrahelpers_spectralshift.R R/02_algebrahelpers_trysolve.R R/02_algebrahelpers_vectorize.R R/02_algebrahelpers_vectorizeMatrices.R R/02_algebrahelpers_weighted_geomean.R R/02_modelformation_PCCPDC.R R/03_modelformation_adjust_p_values.R R/03_modelformation_defaultoptimizer.R R/03_modelformation_factorstart.R R/03_modelformation_fixAdj.R R/03_modelformation_fixMatrix.R R/03_modelformation_fixMu.R R/03_modelformation_fixTau.R R/03_modelformation_formModelMatrices.R R/03_modelformation_generateParameterTable.R R/03_modelformation_impliedcovstructures.R R/03_modelformation_labtoind.R R/03_modelformation_matrixSetup_Isingbeta.R R/03_modelformation_matrixSetup_Isingtau.R R/03_modelformation_matrixSetup_SD.R R/03_modelformation_matrixSetup_beta.R R/03_modelformation_matrixSetup_cholesky.R R/03_modelformation_matrixSetup_delta.R R/03_modelformation_matrixSetup_isingomega.R R/03_modelformation_matrixSetup_kappa.R R/03_modelformation_matrixSetup_lambda.R R/03_modelformation_matrixSetup_mu.R R/03_modelformation_matrixSetup_omega.R R/03_modelformation_matrixSetup_rho.R R/03_modelformation_matrixSetup_sigma.R R/03_modelformation_matrixSetup_tau.R R/03_modelformation_missingpatterns.R R/03_modelformation_missingpatterns_covs.R R/03_modelformation_samplestats.R R/03_modelformation_samplestats_norawts.R R/03_modelformation_samplestats_rawts.R R/03_modelformation_sparseordense.R R/03_modelformation_startvaluesandbounds.R R/03_modelformation_tsData.R R/04_generalFit_fitfunction.R R/04_generalFit_gradient.R R/04_generalFit_logLikelihood.R R/04_generalfit_FisherInformation.R R/04_generalfit_VCOV.R R/04_generalfit_impliedModel.R R/04_generalfit_loglikelihood_Ising.R R/04_generalfit_loglikelihood_gauss.R R/04_generalfit_prepareModel.R R/04_modelformation_matrixSetup_flexcov.R R/05_MLestimator_expected_hessian_Gauss.R R/05_MLestimator_expected_hessian_Ising.R R/05_MLestimator_fit_Gauss.R R/05_MLestimator_fit_Ising.R R/05_MLestimator_fitfunction.R R/05_MLestimator_gradient_Gauss.R R/05_MLestimator_gradient_Ising.R R/06_ULS_expectedHessian.R R/06_ULS_fitfunction.R R/06_ULS_gradient.R R/06_weightsMatrix.R R/07_FIMLestimator_expected_hessian_Gauss.R R/07_FIMLestimator_fit_Gauss.R R/07_FIMLestimator_fitfunction.R R/07_FIMLestimator_gradient_Gauss.R R/08_outputHelpers_NAtoFALSE.R R/08_outputHelpers_NAtoTRUE.R R/08_outputHelpers_goodNum.R R/08_outputHelpers_logo.R R/09_modelmodification_clearpars.R R/09_modelmodifivation_emergencystart.R R/14_varcov_derivatives.R R/14_varcov_implied.R R/14_varcov_prepare.R R/15_lvm_derivatives.R R/15_lvm_identify.R R/15_lvm_implied.R R/15_lvm_prepare.R R/16_var1_derivatives.R R/16_var1_implied.R R/16_var1_prepare.R R/18_dlvm1_derivatives.R R/18_dlvm1_identify.R R/18_dlvm1_implied.R R/18_dlvm1_prepare.R R/19_tsdlvm1_derivatives.R R/19_tsdlvm1_identify.R R/19_tsdlvm1_implied.R R/19_tsdlvm1_prepare.R R/20_meta_varcov_derivatives.R R/20_meta_varcov_implied.R R/20_meta_varcov_prepare.R R/21_Ising_derivatives.R R/21_Ising_helperfunctions.R R/21_Ising_identify.R R/21_Ising_implied.R R/21_Ising_prepare.R R/22_ml_lvm_derivatives.R R/22_ml_lvm_identify.R R/22_ml_lvm_implied.R R/22_ml_lvm_prepare.R R/RcppExports.R R/a_models_Ising.R R/a_models_bifactor.R R/a_models_cholesky.R R/a_models_corr.R R/a_models_dlvm1.R R/a_models_frombootnet.R R/a_models_ggm.R R/a_models_gvar.R R/a_models_joingroups.R R/a_models_latentgrowth.R R/a_models_lnm.R R/a_models_lrnm.R R/a_models_lvm.R R/a_models_meta_ggm.R R/a_models_meta_varcov.R R/a_models_ml_lnm.R R/a_models_ml_lrnm.R R/a_models_ml_lvm.R R/a_models_ml_rnm.R R/a_models_ml_tsdlvm1.R R/a_models_ml_tslvgvar.R R/a_models_panelgvar.R R/a_models_precision.R R/a_models_rnm.R R/a_models_sem.R R/a_models_tsdlvm1.R R/a_models_tslvgvar.R R/a_models_var1.R R/a_models_varcov.R R/b_modelexpansions_addMIs.R R/b_modelexpansions_addSEs.R R/b_modelexpansions_addfit.R R/b_modelexpansions_identify.R R/b_modelexpansions_updateModel.R R/c_runmodel.R R/d_stepup.R R/e_modelmodifications_fixpar.R R/e_modelmodifications_freepar.R R/e_modelmodifications_groupequal.R R/e_modelmodifications_groupfree.R R/e_modelmodifications_intersectionmodel.R R/e_modelmodifications_partialprune.R R/e_modelmodifications_prune.R R/e_modelmodifications_setequal.R R/e_modelmodifications_unionmodel.R R/f_conveneince_changedata.R R/f_conveneince_fake_optimr.R R/f_conveneince_fakeoptimr.R R/f_conveneince_generate.R R/f_conveneince_setEstimator.R R/f_conveneince_setoptimizer.R R/f_conveneince_setverbose.R R/f_conveneince_usecpp.R R/f_convenience_CIplot.R R/f_convenience_MIs.R R/f_convenience_bootstrap.R R/f_convenience_bootstrap_SEs.R R/f_convenience_covML.R R/f_convenience_ergodicity.R R/f_convenience_factorscores.R R/f_convenience_fit.R R/f_convenience_getmatrix.R R/f_convenience_modelCompare.R R/f_convenience_parameters.R R/f_convenience_printMethod.R R/f_convenience_residuals.R R/f_convenience_simplestructure.R R/g_simulations_replicator.R R/h_modelsearch.R

README_figs/README-unnamed-chunk-19-1.png

README_figs/README-unnamed-chunk-38-1.png

data/Jonas.RData

data/StarWars.RData

logo.png

man/CIplot.Rd man/Ising.Rd man/Jonas.Rd man/MIs.Rd man/StarWars.Rd man/algebraMatrices.Rd man/bifactor.Rd man/bootstrap.Rd man/changedata.Rd man/compare.Rd man/convenience.Rd man/covML.Rd man/dlvm1_family.Rd man/emergencystart.Rd man/esa.Rd man/factorscores.Rd man/fit.Rd man/fixpar_freepar.Rd man/generate.Rd man/getVCOV.Rd man/getmatrix.Rd man/groupequal_groupfree.Rd man/latentgrowth.Rd man/lvm_family.Rd man/meta_varcov.Rd man/ml_lvm.Rd man/ml_tsdlvm1.Rd man/modelsearch.Rd man/modelupdate.Rd man/parameters.Rd man/parequal.Rd man/partialprune.Rd man/prune.Rd man/psychonetrics-class.Rd man/psychonetrics-package.Rd man/runmodel.Rd man/setverbose.Rd man/simplestructure.Rd man/stepup.Rd man/tsdlvm1_family.Rd man/unionmodel_intersectionmodel.Rd man/var1_family.Rd man/varcov_family.Rd readme.md

src/02_algebragelpers_kronecker.h

src/02_algebrahelpers_RcppHelpers.cpp

src/02_algebrahelpers_RcppHelpers.h

src/02_algebrahelpers_kronecker.cpp

src/02_algebrahelpers_modelMatrix_cpp.cpp

src/02_algebrahelpers_modelMatrix_cpp.h

src/03_modelformation_formModelMatrices_cpp.cpp

src/03_modelformation_formModelMatrices_cpp.h

src/03_modelformation_impliedcovstructures.cpp

src/03_modelformation_impliedcovstructures.h

src/03_modelinformation_sparseordense_cpp.cpp

src/03_modelinformation_sparseordense_cpp.h

src/04_generalFit_FisherInformation_cpp.cpp

src/04_generalFit_gradient_cpp.cpp

src/04_generalFit_gradient_cpp.h

src/04_generalFit_implied_and_prepare.h

src/04_generalfit_fitfunction_cpp.cpp

src/04_generalfit_fitfunction_cpp.h

src/04_generalfit_implied_and_prepare.cpp

src/04_generalfit_loglik_fimlcpp.cpp

src/04_generalfit_psychonetrics_BFGS.cpp

src/05_MLestimator_expected_Hessian_Gauss_cpp.cpp

src/05_MLestimator_expected_Hessian_Gauss_cpp.h

src/05_MLestimator_fit_Gauss_cpp.cpp

src/05_MLestimator_fit_Gauss_cpp.h

src/05_MLestimator_fit_Ising.cpp

src/05_MLestimator_fit_Ising.h

src/05_MLestimator_gradient_Gauss_cpp.cpp

src/05_MLestimator_gradient_Gauss_cpp.h

src/05_MLestimator_gradient_Ising_cpp.cpp

src/05_MLestimator_gradient_Ising_cpp.h

src/06_DWLS_Wmat.cpp

src/06_ULS_expectedHessian_cpp.cpp

src/06_ULS_expectedHessian_cpp.h

src/06_ULS_fitfunction_cpp.cpp

src/06_ULS_fitfunction_cpp.h

src/06_ULS_gradient_cpp.cpp

src/06_ULS_gradient_cpp.h

src/06_WLS_Wmat.cpp

src/07_FIMLestimator_expected_hessian_gauss_cppversion.cpp

src/07_FIMLestimator_expected_hessian_gauss_cppversion.h

src/07_FIMLestimator_fitfunction_cppversion.cpp

src/07_FIMLestimator_fitfunction_cppversion.h

src/07_FIMLestimator_jacobian_gauss.cpp

src/07_FIMLestimator_jacobian_gauss.h

src/10_ordinal_covPrepare.cpp

src/10_ordinal_cppFuns.cpp

src/10_ordinal_cppFuns.h

src/14_varcov_derivatives_cpp.cpp

src/14_varcov_derivatives_cpp.h

src/14_varcov_implied_cpp.cpp

src/14_varcov_implied_cpp.h

src/14_varcov_prepare_cpp.cpp

src/14_varcov_prepare_cpp.h

src/15_lvm_derivatives_cpp.cpp

src/15_lvm_derivatives_cpp.h

src/15_lvm_implied_cpp.cpp

src/15_lvm_implied_cpp.h

src/15_lvm_prepare_cpp.cpp

src/15_lvm_prepare_cpp.h

src/16_var1_derivatives_cpp.cpp

src/16_var1_derivatives_cpp.h

src/16_var1_implied_cpp.cpp

src/16_var1_implied_cpp.h

src/16_var1_prepare_cpp.cpp

src/16_var1_prepare_cpp.h

src/18_dlvm1_derivatives_cpp.cpp

src/18_dlvm1_derivatives_cpp.h

src/18_dlvm1_implied_cpp.cpp

src/18_dlvm1_implied_cpp.h

src/18_dlvm1_prepare_cpp.cpp

src/18_dlvm1_prepare_cpp.h

src/19_tsdlvm1_derivatives.cpp

src/19_tsdlvm1_derivatives_cpp.h

src/19_tsdlvm1_implied_cpp.cpp

src/19_tsdlvm1_implied_cpp.h

src/19_tsdlvm1_prepare_cpp.cpp

src/19_tsdlvm1_prepare_cpp.h

src/20_meta_varcov_derivatives_cpp.cpp

src/20_meta_varcov_derivatives_cpp.h

src/20_meta_varcov_implied.cpp

src/20_meta_varcov_implied_cpp.h

src/20_meta_varcov_prepare_cpp.cpp

src/20_meta_varcov_prepare_cpp.h

src/21_Ising_derivatives.cpp

src/21_Ising_derivatives_cpp.h

src/21_Ising_expectedHessian.cpp

src/21_Ising_helperfunctions.cpp

src/21_Ising_helperfunctions.h

src/21_Ising_implied_cpp.cpp

src/21_Ising_implied_cpp.h

src/21_Ising_prepare_cpp.cpp

src/21_Ising_prepare_cpp.h

src/22_ml_lvm_derivatives.cpp

src/22_ml_lvm_derivatives_cpp.h

src/22_ml_lvm_implied_cpp.cpp

src/22_ml_lvm_implied_cpp.h

src/22_ml_lvm_prepare_cpp.cpp

src/22_ml_lvm_prepare_cpp.h

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/b_modelexpansion_updateModel_cpp.cpp

src/b_modelexpansion_updateModel_cpp.h

src/b_modelexpansions_addMIs_cpp.cpp

src/b_modelexpansions_addSEs_cpp.cpp

SachaEpskamp/psychonetrics documentation built on Sept. 1, 2023, 3:40 a.m.