tests/testthat/test_detection_frequency.R

In SilentSpringInstitute/RNHANES: Facilitates Analysis of CDC NHANES Data

test_that("Calculating detection frequencies works", {
  skip_on_cran()

  destination <- tempdir()

  test_that("Passes spot check on raw data", {
    dat <- nhanes_load_data("PFC", "2011-2012", destination = destination, demographics = TRUE)
    freqs <- nhanes_detection_frequency(dat, c("LBXPFUA", "LBXPFDO"), c("LBDPFUAL", "LBDPFDOL"))

    expect_equal(freqs$value, c(0.5926, 0.0908), tolerance = 1e-3)

  })

  test_that("Passes spot check on recoded data", {
    dat <- nhanes_load_data("PFC", "2011-2012", demographics = TRUE, recode = TRUE, destination <- getOption("RNHANES_destination", tempdir())
)
    freqs <- nhanes_detection_frequency(dat, c("LBXPFUA", "LBXPFDO"), c("LBDPFUAL", "LBDPFDOL"))

    expect_equal(freqs$value, c(0.5926, 0.0908), tolerance = 1e-3)
  })

})