consensusClusterCNR: run consensus clustering

Description Usage Arguments Value Examples

View source: R/consensusClusterCNR.R

Description

Function runs consensus clustering for a pre-determined sequence of K.

Usage

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consensusClusterCNR(
  cnr,
  maxK = 40,
  iters = 200,
  title = "cnr_ccp",
  innerLinkage = "ward.D2",
  finalLinkage = "ward.D2",
  seed = 2020.0314,
  verbose = TRUE,
  ...
)

Arguments

cnr

a cnr object

maxK

maximum K, end of K sequence

iters

number of times the clustering runs

title

title for the consensus cluster map

innerLinkage

inner linkage, see ConsensusClusterPlus

finalLinkage

final linkage, see ConsensusClusterPlus

seed

seed of analysis

verbose

print out progress

...

additional parameters for ConsensusClusterPlus e.g. plot = "png"

Value

A cnr object that contains the output of ConsensusClusterPlus for the specified Ks.

Examples

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SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.