This table was constructed by mapping bin regions to gene coordinates. We found the simplest way to do this, was to pull the gencode annotation with biomaRt[https://bioconductor.org/packages/release/bioc/vignettes/biomaRt/inst/doc/biomaRt.html] and use findOverlap with GenomicRanges[https://bioconductor.org/packages/release/bioc/vignettes/GenomicRanges/inst/doc/GenomicRangesIntroduction.html]. The resulting GRanges object was saved as a text file.
A data frame with chromosome and position information
seqnames, chromosome – this is comes from GenomicRanges and was not changed
start, gene start coordinate
end, gene end coordinate
strand, gene strand
ensembl_gene_id, ENSEMBL gene ID
hgnc.symbol, HGNC gene symbol
gene.type, gene type
bin.id, bin ID
#' @docType data
A table to interpolate bin copy number to individual genes.
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