gene.index: Bin-to-gene index

Description Usage Format Details Source

Description

This table was constructed by mapping bin regions to gene coordinates. We found the simplest way to do this, was to pull the gencode annotation with biomaRt[https://bioconductor.org/packages/release/bioc/vignettes/biomaRt/inst/doc/biomaRt.html] and use findOverlap with GenomicRanges[https://bioconductor.org/packages/release/bioc/vignettes/GenomicRanges/inst/doc/GenomicRangesIntroduction.html]. The resulting GRanges object was saved as a text file.

Usage

1

Format

A data frame with chromosome and position information

#' @docType data

Details

A table to interpolate bin copy number to individual genes.

Source

https://github.com/SingerLab/gac


SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.