gisticGR: Gistic Genomic Ranges, get genes in gene.index that overlap...

Description Usage Arguments Details

View source: R/gisticGR.R

Description

**Still in development** ** requires GenommicRanges

Usage

1
gisticGR(cnr, grTR, oncokb = TRUE, depmeans = TRUE)

Arguments

cnr

a cnr bundle

grTR

gistic regions table, output from gisticRegions

oncokb

OncoKB cancer gene annotations (TRUE/FALSE) (see ?oncoKB_annotation)

depmeans

dependency score means for cells of interest e.g. DepMap achilles scores (see ?depmap_annotation), (TRUE/FALSE)

Details

note if oncokb or depmeans are FALSE, both annotations will be ignored


SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.