gisticRegions: Process GISTIC2 output // output only grTR read in gistic...

Description Usage Arguments Examples

View source: R/gisticRegions.R

Description

**Still in development**

Usage

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gisticRegions(gisticDir, conf = 80)

Arguments

gisticDir

path to directory of gistic output

conf

confidence used in gistic, default is 75, for single-cells 80 or highrer works a little better. Also, requires increasing amp/del calling thresholds to log2(1/2) for deletions, and log2(3/2) for gains and amplifications

Examples

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## Not run: 

grTR <- gisticRegions("path/to/gistic/", conf = 80)


## End(Not run)

SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.