phyloCNR | R Documentation |
Calculating cell-to-cell distances, heirarchical clustering, and generating a tree class 'phylo'
phyloCNR( cnr, root.cell = NULL, dist.method = "bray", hclust.method = "ward.D2", ... )
cnr |
a cnr bundle |
root.cell |
a cellID to root the three. |
dist.method |
method for calculating cell-to-cell distance (see vegdist) |
hclust.method |
method for heirarchical clustering (see hclust) |
... |
other parameters passed to vegdist |
Creates a cell-to-cell distance matrix, runs heirarchical clustering, and converts the 'hclust' object to an 'ape' class 'phylo' object.
cdb cell to cell Bray-Curtis dissimiarly
hcdb heirarchical clustering of distance matrix
phylo ape class 'phylo' object
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