scClustCNR: implementation of SCclust pipeline

Description Usage Arguments Source

View source: R/scClustCNR.R

Description

implementation of SCclust pipeline

Usage

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scClustCNR(
  cnr,
  cytobands,
  hc.method = "average",
  tree.method = "average",
  run.fisher = TRUE,
  ...
)

Arguments

cnr

a cnr bundle

cytobands

UCSC cytobands file

hc.method

clustering method for hclust_tree

tree.method

clustering method for tree_py

run.fisher

logical, weather you want to run sim_fisherCNR. defaults TRUE. If FALSE, it assumes you have ran sim_fisherCNR before, and the cnr already contains cnr[["pins"]] and cnr[["fisher"]]

...

additional arguments passed

Source

https://github.com/KrasnitzLab/SCclust


SingerLab/gac documentation built on Aug. 14, 2021, 10:57 a.m.