sim_fisherCNR: implementation of SCclust sim_fisher_wrapper

Description Usage Arguments Value Source Examples

View source: R/scClustCNR.R

Description

scClust uses Fisher distance

Usage

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sim_fisherCNR(cnr, cytobands, centromere = c("p11", "q11"), nsim = 200, ...)

Arguments

cnr

a cnr bundle

cytobands

UCSC cytobands file

centromere

cytoband boundaries of the centromere (will be excluded)

nsim

number of Fisher wrapper simulations

...

additional parameters pased to SCclust::sim_fisher_wrapper

Value

SCclust pipeline and objects

Source

https://github.com/KrasnitzLab/SCclust

Examples

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## Not run: 
## the simulated data does not run well
data(cnr, hg19_cytoBand)
cnr <- sim_fisherCNR(cnr, cytobands = hg19_cytoBand)

## End(Not run)

SingerLab/gac documentation built on Aug. 14, 2021, 10:57 a.m.