make_marker_names: Make genotypeR compliant marker names from the output of...
In StevisonLab/genotypeR: SNP Genotype Marker Design and Analysis

Description Usage Arguments Value Examples

make_marker_names makes genotypeR compliant names. This is used for input into SNP assay design software. The output is also used in Ref_Alt_Table.

1	make_marker_names(x)

`x`	Output of read_in_Master_SNPs_data

A data frame of GrandMasterSNPs markers with correct marker names

data(markers)
markers <- make_marker_names(markers)

## Not run: 
##example 
GrandMasterSNPs_markers  <- read_in_Master_SNPs_data("GrandMasterSNPs_output")
marker_names_GrandMasterSNPs_markers <- make_marker_names(GrandMasterSNPs_markers)
If subset of markers needed
use the sequenom output to subset the overall marker set from
GrandMasterSNPs output
seq_test_data <- read_in_sequenom_data("path_to_sequenom_data")
col_seq_data <- colnames(seq_test_data)
col_markers <- test_data_marker_names$marker_names
markerinstudy <- test_data_marker_names[col_markers%in%col_seq_data,]

## End(Not run)