Files in StoreyLab/popkin
Estimate Kinship and FST under Arbitrary Population Structure
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/admix_label_cols.R
R/admix_reorder_cols.R
R/avg_kinship_subpops.R
R/fst.R
R/get_mem_lim.R
R/hgdp_subset.R
R/inbr.R
R/inbr_diag.R
R/mean_kinship.R
R/n_eff.R
R/n_eff_max_gradient.R
R/n_eff_max_heuristic.R
R/n_eff_max_newton.R
R/phylo_max_edge.R
R/plot_admix.R
R/plot_phylo.R
R/plot_popkin.R
R/popkin-package.R
R/popkin.R
R/popkin_A.R
R/popkin_A_min_subpops.R
R/popkin_af.R
R/pwfst.R
R/rescale_popkin.R
R/solve_m_mem_lim.R
R/validate_kinship.R
R/weights_subpops.R
README.md
cran-comments.md
data/hgdp_subset.rda
inst/CITATION
man/admix_label_cols.Rd
man/admix_order_cols.Rd
man/avg_kinship_subpops.Rd
man/figures/logo.png
man/fst.Rd
man/hgdp_subset.Rd
man/inbr.Rd
man/inbr_diag.Rd
man/mean_kinship.Rd
man/n_eff.Rd
man/plot_admix.Rd
man/plot_phylo.Rd
man/plot_popkin.Rd
man/popkin-package.Rd
man/popkin.Rd
man/popkin_A.Rd
man/popkin_A_min_subpops.Rd
man/popkin_af.Rd
man/pwfst.Rd
man/rescale_popkin.Rd
man/validate_kinship.Rd
man/weights_subpops.Rd
tests/testthat.R
tests/testthat/Xs.RData
tests/testthat/Xs.bed
tests/testthat/Xs.bim
tests/testthat/Xs.fam
tests/testthat/make_data.R
tests/testthat/test_popkin_BEDMatrix.R
tests/testthat/test_popkin_af.R
tests/testthat/test_popkin_fn.R
tests/testthat/test_popkin_plot.R
tests/testthat/test_popkin_precalc.R
tests/testthat/test_popkin_random.R
vignettes/popkin.Rmd
vignettes/popkin.bib
