Files in SydneyBioX/scdney
Single cell data integrative analysis

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/KNNfunctions.R R/RcppExports.R R/Rtsne.R R/SIMLR.R R/bAccuracy.R R/barplotCI.R R/compute.multiple.kernel.R R/data.R R/densityCI.R R/ensemble.R R/evalScClustBench.R R/featureSelection.R R/findMarker.R R/fitGLM.R R/learningCurve.R R/matPCs.R R/multiAdaSampling.R R/network.diffusion.R R/plotKmeansEval.R R/plotSimlrEval.R R/predict_scClassify.R R/runHOPACH.R R/scClassify.R R/scClust.R R/scClustBench.R R/scDC_clustering.R R/scDC_noClustering.R R/scdney-package.R R/train_scClassify.R R/tsne.R R/utils.R R/utils.simlr.R R/utils_scClassify.R R/utils_scDC.R README.md
data/GSE82187.sample.RData
data/GSE87795_liver.development.data.RData
data/scClassify_example.rda
data/sim.rda
doc/scdney.R doc/scdney.Rmd
doc/scdney.html
docs/articles/index.html
docs/articles/scClassify.html
docs/articles/scClassify_files/figure-html/unnamed-chunk-9-1.png
docs/articles/scDC.html
docs/articles/scDC_files/figure-html/unnamed-chunk-4-1.png
docs/articles/scDC_files/figure-html/unnamed-chunk-5-1.png
docs/articles/scdney.html
docs/articles/scdney_files/crosstalk-1.0.0/css/crosstalk.css
docs/articles/scdney_files/crosstalk-1.0.0/js/crosstalk.js
docs/articles/scdney_files/crosstalk-1.0.0/js/crosstalk.js.map
docs/articles/scdney_files/crosstalk-1.0.0/js/crosstalk.min.js
docs/articles/scdney_files/crosstalk-1.0.0/js/crosstalk.min.js.map
docs/articles/scdney_files/datatables-binding-0.5/datatables.js
docs/articles/scdney_files/datatables-binding-0.7/datatables.js
docs/articles/scdney_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/scdney_files/dt-core-1.10.16/css/jquery.dataTables.extra.css
docs/articles/scdney_files/dt-core-1.10.16/css/jquery.dataTables.min.css
docs/articles/scdney_files/dt-core-1.10.16/js/jquery.dataTables.min.js
docs/articles/scdney_files/figure-html/unnamed-chunk-10-1.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-2.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-3.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-4.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-5.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-6.png
docs/articles/scdney_files/figure-html/unnamed-chunk-11-7.png
docs/articles/scdney_files/figure-html/unnamed-chunk-4-1.png
docs/articles/scdney_files/figure-html/unnamed-chunk-5-1.png
docs/articles/scdney_files/htmlwidgets-1.3/htmlwidgets.js
docs/articles/scdney_files/jquery-1.12.4/LICENSE.txt
docs/articles/scdney_files/jquery-1.12.4/jquery.min.js
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/bAccuracy.html
docs/reference/barplotCI.html
docs/reference/densityCI.html
docs/reference/evalScClustBench.html
docs/reference/findMarker.html
docs/reference/fitGLM.html
docs/reference/getN.html
docs/reference/index.html
docs/reference/learningCurve.html
docs/reference/matPCs.html
docs/reference/multiAdaSampling.html
docs/reference/plotKmeansEval.html
docs/reference/plotSimlrEval.html
docs/reference/predict_scClassify.html
docs/reference/runHOPACH.html
docs/reference/scClassify.html
docs/reference/scClassify_example.html
docs/reference/scClust.html
docs/reference/scClustBench.html
docs/reference/scDC_clustering.html
docs/reference/scDC_noClustering.html
docs/reference/sim.html
docs/reference/train_scClassify.html
img/barplot.png
img/densityplot.png
img/scClust.jpg
img/scReClassify.jpg
man/bAccuracy.Rd man/barplotCI.Rd man/densityCI.Rd man/evalScClustBench.Rd man/findmarker.Rd man/fitGLM.Rd man/getN.Rd man/learningCurve.Rd man/matPCs.Rd man/multiAdaSampling.Rd man/plotKmeansEval.Rd man/plotSimlrEval.Rd man/predict_scClassify.Rd man/runHOPACH.Rd man/scClassify.Rd man/scClassify_example.Rd man/scClust.Rd man/scClustBench.Rd man/scDC_clustering.Rd man/scDC_noClustering.Rd man/sim.Rd man/train_scClassify.Rd
scdney.Rproj
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/Rtsne.cpp
src/projsplx_R.c
src/sptree.cpp
src/sptree.h
src/tsne.cpp
src/tsne.h
src/vptree.h
vignettes/.gitignore
vignettes/scClassify.Rmd vignettes/scDC.Rmd vignettes/scdney.Rmd
vignettes/scdney.html
SydneyBioX/scdney documentation built on Aug. 22, 2019, 10:55 a.m.