Provides additional functions for network files created using KINC.

analyzeEdgeCat | Performs significant testing of a single edge in the network... |

analyzeEdgeQuant | Performs linear regression of a quantitative traits against a... |

analyzeNetCat | Performs significant testing of each edge in the network for... |

analyzeNetQuant | Performs significance association for every edge in the... |

clusterEdges | Perfoms heirarchical clustering of edges in a network based... |

drawEdgeListHeatMap | Draws a heatmap with dendrogram of a module in the netework. |

drawEdgeTreeHeatMap | Draws a heatmap with dendrogram with clusters identified. |

findLinkedCommunities | Finds Linked communities in the network. |

getSampleMatrix | Generates a matrix containing edge sample strings digits. |

graphEdgeList | Draws the graph of a set of edges in the network |

graphNet | Draws the graph of the entire network |

highlightEdgeList | Colors the edges of a given edge list on the currently... |

loadNetwork | Imports a network file produced by KINC into a data frame. |

loadSampleAnnotations | Imports sample annotations. |

plot3DEdgeList | Plots a 3D scatterplot for a given list of edges. |

plot3DPair | Plots a 3D scatterplot for a given pair of nodes. |

plotEdgeList | Plots a 2D scatterplot for a given list of edges. |

RMT | Performs the RMT analysis on a gene similarity matrix. |

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