In TaylorAndrew/atPlot: Methods and Wrappers for Plots in R

ggplot2 Methods and Wrappers:

ggFootnote() provides a wrapper for gridExtra methods of adding text outside the margins of a ggplot2 object, commonly needed for in-graphic footnotes.

Usage: ggFootnote(plotObject, footnote)

ggSurv() provides a wrapper for ggplot2 with geom_step and points layers commonly used for kaplan-meier survival curves with censoring.

Usage: ggSurv(s)

multiPlot() provides a wrapper for grid::grid.layout for panel plotts using ggplot2 objects.

Usage: multiPlot(...)

Other wrapper functions:

applyLabels() is a wrapper for factor() which will apply a common label to one or more variables in data.frame.

Usage: applyLabels(data = df, varlist = c("var1", "var2"), labels = c("No", "Yes"))

reFactor() reorders the ordering of the levels of a factor variable. If the order is not given, the factor levels are reverse-ordered.

Usage: reFactor(x, index_order = c(3, 1, 2))

Plot methods using base R:

dichot() converts a vector to 0 and 1s, converting all data in matching group1 to 0 and all data matching group2 to 1, with all other data being set to NA

Usage: dichot(x, group1=c("No", "no"), group2=c("Yes", "yes"))

dummyCode() creates a standard set of variables dummy coded based on a input vector.

Usage: dummyCode(x)

multChoiceCondense() takes a set of variables in a dataset and collapses them into a single variable.

Usage: multChoiceCondense(data = df, varList = c())

Other data cleaning methods:

logical_join() provides booliean variable appended onto data1, indicating which rows have matching observations in data2

Usage: logical_join(df1, df2, by =) df1 %>% logical_join(df2, by =)

normalize() normalize transforms a numeric vector to percentile ranks

Usage: normalize(x)

rmOutliers() converts outleirs (as defined as being some x number of standard deviations from the mean) to either NA, mean +/- x standard deviations, or the mean.

Usage: rmOutliers(x, sdCut = 3, method = "remove")

t_() is an expansion of the t() function, in which, if x is a data.frame(), it is transposed, and the first column of the output data.frame is the column names from the input data.frame.

Usage: t_(x)

TaylorAndrew/atPlot documentation built on May 9, 2019, 4:23 p.m.