seurat_plot_feature_rank: Feature Rank plot Seurat

In Terkild/scfeaturerank: Feature Rank plot for single-cell analysis

Description

Create feature rank plot from Seurat object

Usage

seurat_plot_feature_rank(
  object,
  feature,
  group.by = NULL,
  split.by = NULL,
  celltype_group = NULL,
  cell_color_by = NULL,
  slot = "counts",
  ...
)

Arguments

object	Seurat object
feature	Meta.data column for ranking and x-axis (i.e. UMI count).
group.by	Meta.data column for grouping variable for comparison (i.e. titration).
split.by	Meta.data column for splitting plots
celltype_group	Meta.data column celltype for grouping cells (i.e. lineage).
cell_color_by	Meta.data column for coloring cells (i.e. celltype). Used for "barcode" plot.
slot	Slot that the value should be extracted from (default "counts")

Value

ggplot2 object or list of ggplot2 objects (if combine=FALSE)

Terkild/scfeaturerank documentation built on March 6, 2021, 1:04 p.m.