plot.FAI.BLUP: Multitrait index based on factor analysis and ideotype-design

Description Usage Arguments Author(s) References Examples

View source: R/plot.FAI.BLUP.R

Description

Plot the multitrait index based on factor analysis and ideotype-design proposed by Rocha et al. (2018).

Usage

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## S3 method for class 'FAI.BLUP'
plot(x, ideotype = 1, SI = 15, radar = TRUE,
     size.point = 2, col.sel = "red",
     col.nonsel = "black", ...)

Arguments

x

An object of class WAASB

ideotype

The ideotype to be plotted. Default is 1.

SI

An integer [0-100]. The selection intensity in percentage of the total number of genotypes.

radar

Logical argument. If true (default) a radar plot is generated after using coord_polar().

size.point

The size of the point in graphic.

col.sel

The colour for selected genotypes.

col.nonsel

The colour for nonselected genotypes.

...

Other arguments of the function.

Author(s)

Tiago Olivoto [email protected]

References

Rocha, J.R.A.S.C.R, J.C. Machado, and P.C.S. Carneiro. 2018. Multitrait index based on factor analysis and ideotype-design: proposal and application on elephant grass breeding for bioenergy. GCB Bioenergy 10:52-60. doi: doi:10.1111/gcbb.12443.

Examples

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  multivariate = WAASB(data_ge,
                       resp = c(GY, HM),
                       gen = GEN,
                       env = ENV,
                       rep = REP)

  FAI = FAI.BLUP(multivariate,
                 SI = 15,
                 DI = c("max", "max"),
                 UI = c("min", "min"))
  plot(FAI)

TiagoOlivoto/WAASB documentation built on April 1, 2019, 10:25 a.m.